Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2328 ATGCTAGTGGCACTAGTGTTGCTGCTGGCATTGAGCAATGAAGTAAGAGTTAATGGTTATGGTGGTTCTGAGCAATGTGAGTATAGTCCAGAACTAGCTCCAAGACCACACAGTGTGTCTATTTTGGAGTTTGGTGCTGTTGGGGATGGAAAGACACTGAATACCATTGCATTCCAGAATGCAATATTCTATCTCAAGTCATTCGCCGATAAGGGCGGCGCTCAGCTTTATGTGCCGCCTGGACAATGGCTCACCGGAAGCTTCAACCTCACTAGCCATCTTACCCTCTTTCTAGAAAGAGGTGCTGTCATTATTGGATCTCAGGATCCATTTCATTGGGAAGTTATTGATCCTTTACCTTCTTATGGACGAGGAATCGAAGCTCCCGGTGGAAGATACCTTAGCTTGATAAATGGATACATGTTAAATGATGTGGTCATTACAGGCAACAATGGGACCATAGATGGTGTTGGATCGATTTGGTGGCGATCCTTTACTTCTCATTCCCTGAACTATAGTCGACCTCATCTAATCGAATTAGTCGCATCTAACTCGGTGGTAGTTTCAAATATCACATTCCTGAATACCCCTGCATATGGCATCCACCCAGTTTATTGCAGCAATGTACATATTCACAATATTTCAATATCAGCTCCTTCAGAATCCCCTTTCACTGTTGGCATAGTACCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTACAATTAGCATGGGGTTTGATGCAATTGCACTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCTACAAAAAATGTGCACATCAGAAGGGTGCATCTCCAATCTTCTTCCGGCTCTACTCTTGCGTTTGGCAGCGACATGTCCGGCGGCATTTCGAATGTCCTAGTGGAGCATGTTCATCTCTACAACTCAAAAACCGGCATTGTGTTCAGAACCACCAGGGGAAGAGGTGGTTACATGAAGGAGATAGTTATATCAGACATAGAAATGGAGAACATATACCGAGCAATCGCGGCCACAGGCCACTGTGGATCTCATCCTGATGACAAGTTTGATCCTAATGCTCTCCCACACTTGGATCAAATTATATTGAAGAACATGACTGGGACAAACATCACTATTGCTGGAACCTTTTCTGGACTAGAAGAATCTCCTTTTACTAACATATGCCTTTCAAATCTAAACTTCTCTCTCAATTCTATGTCTCCCTTTACATGGGAATGCTCAAATGTCTCTGGATTCTCTGAATCTGTTGTCCCAAAACCTTGTCTTGATCTTGAGACCCCTTCAGTTTCTTACACAGCATGTTCCTCCATGCTAAGCAATAGAGCAAAGGCAACAACACAAGCTTCATATTCTTCTGCTTGA 1380 0.4333 MLVALVLLLALSNEVRVNGYGGSEQCEYSPELAPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGQWLTGSFNLTSHLTLFLERGAVIIGSQDPFHWEVIDPLPSYGRGIEAPGGRYLSLINGYMLNDVVITGNNGTIDGVGSIWWRSFTSHSLNYSRPHLIELVASNSVVVSNITFLNTPAYGIHPVYCSNVHIHNISISAPSESPFTVGIVPDSSDNVCIEDCTISMGFDAIALKSGWDEYGIAYGRPTKNVHIRRVHLQSSSGSTLAFGSDMSGGISNVLVEHVHLYNSKTGIVFRTTRGRGGYMKEIVISDIEMENIYRAIAATGHCGSHPDDKFDPNALPHLDQIILKNMTGTNITIAGTFSGLEESPFTNICLSNLNFSLNSMSPFTWECSNVSGFSESVVPKPCLDLETPSVSYTACSSMLSNRAKATTQASYSSA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2328 459 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 2 443 - -
Ahy1g2328 459 SMART pbh1 295 316 IPR006626 -
Ahy1g2328 459 SMART pbh1 267 289 IPR006626 -
Ahy1g2328 459 SMART pbh1 233 254 IPR006626 -
Ahy1g2328 459 SMART pbh1 206 232 IPR006626 -
Ahy1g2328 459 SMART pbh1 183 205 IPR006626 -
Ahy1g2328 459 SMART pbh1 324 345 IPR006626 -
Ahy1g2328 459 Gene3D - 25 421 IPR012334 -
Ahy1g2328 459 PANTHER PECTIN LYASE-RELATED 2 443 - -
Ahy1g2328 459 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Ahy1g2328 459 SUPERFAMILY Pectin lyase-like 32 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2328 Ahy-Chr1 101262319 101265037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2328 1 457 Glycoside Hydrolase AT3G16850 59.956 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2328 - - gmx:100802343 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2599 11 142205098 142207721 Ahy1g2328 1 101262319 101265037 hybridization
Ahy1g2328 1 101262319 101265037 Ahy4g0904 4 15809559 15812544 PCT
Ahy4g0904 4 15809559 15812544 Ahy1g2328 1 101262319 101265037 PCT