Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0902 ATGGGTGTCACAGCAACATTCACACATGAGTTTTGTTCCTCTGTTGCTCCGCCACGCCTTTTCAAGGGCTTGATCACAGACTCAAGTAATTTGCTTCCAAAGCTATTACCACAGTTGATTAAAGATGTCACCATTATCCAAGGAGATGGAGAAGCTGGAACCATTGAACAAGTTAACTTTGCACAAGCTATCCCCTTCAAATATCTAAAACACAGGATTGATGTGGTTGATAAGGAAAACCTGGTGTGCAAATACACTATGATTGAAGGGGATCCATTGGGAGAAAAGCTTGAGTCTATAGCTTATGAGGTGAATTTTGAGGCCACTAGTGATGGAGGTTGCATATGTAAAATGACTAGCAAATACAATGCCATAGGTGATGCTGAAATTAAGGAGGAAGAAGTAAAGGAAGGAAGAGAAAGCTCCATTGGAATTTGTAGGGTTGTGGAAGCCTACCTATTGAAGAATCCACAAATTTATGCTTAA 486 0.4033 MGVTATFTHEFCSSVAPPRLFKGLITDSSNLLPKLLPQLIKDVTIIQGDGEAGTIEQVNFAQAIPFKYLKHRIDVVDKENLVCKYTMIEGDPLGEKLESIAYEVNFEATSDGGCICKMTSKYNAIGDAEIKEEEVKEGRESSIGICRVVEAYLLKNPQIYA* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0902 161 Pfam Pathogenesis-related protein Bet v 1 family 4 156 IPR000916 GO:0006952
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 51 60 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 86 99 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 67 86 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 4 24 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 27 37 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 111 127 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 PRINTS Major pollen allergen Bet V1 signature 145 155 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 SUPERFAMILY Bet v1-like 5 160 - -
Ahy4g0902 161 CDD Bet_v1-like 6 153 - -
Ahy4g0902 161 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 90 122 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy4g0902 161 Gene3D - 1 161 IPR023393 -
Ahy4g0902 161 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 161 - -
Ahy4g0902 161 PANTHER - 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0902 Ahy-Chr4 15796576 15798035 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0902 - - adu:107483518 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0988 14 16454796 16456205 Ahy4g0902 4 15796576 15798035 hybridization
Ahy4g0902 4 15796576 15798035 Ahy11g2602 11 142215363 142216644 PCT
Ahy4g0902 4 15796576 15798035 Ahy1g2325 1 101252953 101254145 PCT