Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2325 ATGGGAGTCACAACCTTTAAGCAGGAGTATTCATCTTCTGTTGCACCATCACGTATGTTCCAGGCTTTGATCATAGACTCCAGAACTTTGATTCCAAAGCTGTTGCCACAGTTTGTAAAAGAAGTCAACCTCATCCAAGGAAACGGGGAAGCTGGTAGCATTGAACAAGTTAACTTCAGTGAAGCTGGTCCATTCAAATATCTGAAACACAGGATTGATGAGCTTGACAAGGACAACTTGGTTTGCAAATACACTCTGATCGAAGGCGATCCGTTAGGCGACAAGCTCGAGTCTGTTGCTTATGAGGTGAGATTTGAGGCGACTGATGATGGAGGTTGCCTCTGTAAAATGAGTAGCAATTACAACACCATCGGTGAGTATCAAGTGACAGAGGAAGAGGTGAAGGAAGGAAGAGAAAGCACAATTGGAATTTACAAAGTTGTGGAGTCTTACCTGAAGGAGAATCCAAATGTCTATGCTTAA 483 0.4306 MGVTTFKQEYSSSVAPSRMFQALIIDSRTLIPKLLPQFVKEVNLIQGNGEAGSIEQVNFSEAGPFKYLKHRIDELDKDNLVCKYTLIEGDPLGDKLESVAYEVRFEATDDGGCLCKMSSNYNTIGEYQVTEEEVKEGRESTIGIYKVVESYLKENPNVYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2325 160 CDD Bet_v1-like 5 152 - -
Ahy1g2325 160 SUPERFAMILY Bet v1-like 2 159 - -
Ahy1g2325 160 Pfam Pathogenesis-related protein Bet v 1 family 1 152 IPR000916 GO:0006952
Ahy1g2325 160 Gene3D - 1 160 IPR023393 -
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ahy1g2325 160 PANTHER - 1 160 - -
Ahy1g2325 160 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 160 - -
Ahy1g2325 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2325 Ahy-Chr1 101252953 101254145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2325 - - gmx:100527307 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2602 11 142215363 142216644 Ahy1g2325 1 101252953 101254145 hybridization
Ahy1g2325 1 101252953 101254145 Ahy14g0985 14 16431462 16432923 PCT
Ahy1g2325 1 101252953 101254145 Ahy4g0901 4 15716627 15717941 PCT
Ahy14g0988 14 16454796 16456205 Ahy1g2325 1 101252953 101254145 PCT
Ahy4g0902 4 15796576 15798035 Ahy1g2325 1 101252953 101254145 PCT