Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0854 ATGTCTTCTTCTTCTTCTCGATTCAATGGCAAGATGGGTGGCTTGAAGTTTTGCACCAAATGCAATAACATTCTGTACCCTAAGGAAGACAAGGAGTTAAAGATTCTCATGGACGCTTGCCGCAATTGCGATCACGAGGAGATTGCTCATAGCAACATTGTGTATAGAACAAAGATACATCATTCTACTGCAGAGAATACTCAGGCTACTGAGAATCTAGCTGCAGACCCAACTCTTCCACGCACCAAGGCGGCTCGCTGCAGTCAATGCAACCATGGAGAAGCTGTGTTCTTTCAGGGAACAGCCAGAGGTGAAGAAGAAATGTGTCTTTTTTTCGTTTGCTGCAACCCGAATTGCGGTCACCGATGGAGAGACTGA 378 0.4577 MSSSSSRFNGKMGGLKFCTKCNNILYPKEDKELKILMDACRNCDHEEIAHSNIVYRTKIHHSTAENTQATENLAADPTLPRTKAARCSQCNHGEAVFFQGTARGEEEMCLFFVCCNPNCGHRWRD* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0854 125 SUPERFAMILY Zinc beta-ribbon 14 59 - -
Ahy4g0854 125 Pfam RNA polymerases M/15 Kd subunit 15 47 IPR001529 GO:0006351
Ahy4g0854 125 PIRSF RNApol_RpoM 15 125 IPR012164 GO:0006351
Ahy4g0854 125 PANTHER DNA-DIRECTED RNA POLYMERASE 12 125 IPR012164 GO:0006351
Ahy4g0854 125 SUPERFAMILY Zinc beta-ribbon 64 125 - -
Ahy4g0854 125 CDD Zn-ribbon_RPB9 75 124 IPR034012 GO:0006379
Ahy4g0854 125 Gene3D - 12 57 - -
Ahy4g0854 125 SMART rpol9cneu 16 69 IPR001529 GO:0006351
Ahy4g0854 125 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 12 125 - -
Ahy4g0854 125 Pfam Transcription factor S-II (TFIIS) 86 124 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ahy4g0854 125 Gene3D - 58 125 - -
Ahy4g0854 125 ProSiteProfiles Zinc finger TFIIS-type profile. 83 124 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ahy4g0854 125 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 17 43 IPR019761 -
Ahy4g0854 125 SMART Cys4_2 85 125 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0854 Ahy-Chr4 14153073 14154902 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0854 K03017 - nnu:104605091 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0947 14 15619654 15621849 Ahy4g0854 4 14153073 14154902 hybridization
Ahy11g2640 11 142633407 142635292 Ahy4g0854 4 14153073 14154902 PCT
Ahy1g2292 1 100860816 100863040 Ahy4g0854 4 14153073 14154902 PCT
Ahy4g0854 4 14153073 14154902 Ahy11g2640 11 142633407 142635292 PCT
Ahy4g0854 4 14153073 14154902 Ahy1g2292 1 100860816 100863040 PCT