Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2292 ATGACTGTGTACAAGTTCTGCCCTGAATGCAACAATATTCTTTATCCTAAGGAAGACAGGGAGCATAAAATTCTCTTCTTCGCTTGCCGCACCTGTGATCATCAGGTTGCTGACAATAACTGTGTGTATAGAAATGAGATATATCATTCGGCTGAGGAGCGAACTCAAGTGTTGGAAGATGTAGCTTCAGATCCAACTCTTCCTCGTACCAAGTCTGTTCGTTGCGCTCAATGCAATCATGGAGAAGCTCTCTTCTTCCAGGCAACTATTAGAAGGGAAGAAGGTATGACACTTTCTTATGTTTGCTGCAACCCAAACTGTGGCTACCGATGGCGAGATCAAGATTCATAA 351 0.433 MTVYKFCPECNNILYPKEDREHKILFFACRTCDHQVADNNCVYRNEIYHSAEERTQVLEDVASDPTLPRTKSVRCAQCNHGEALFFQATIRREEGMTLSYVCCNPNCGYRWRDQDS* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2292 116 ProSiteProfiles Zinc finger TFIIS-type profile. 71 112 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ahy1g2292 116 Gene3D - 1 45 - -
Ahy1g2292 116 PANTHER DNA-DIRECTED RNA POLYMERASE 1 113 IPR012164 GO:0006351
Ahy1g2292 116 SUPERFAMILY Zinc beta-ribbon 50 114 - -
Ahy1g2292 116 CDD Zn-ribbon_RPB9 63 112 IPR034012 GO:0006379
Ahy1g2292 116 PIRSF RNApol_RpoM 4 115 IPR012164 GO:0006351
Ahy1g2292 116 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 113 - -
Ahy1g2292 116 SMART Cys4_2 73 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ahy1g2292 116 Gene3D - 46 113 - -
Ahy1g2292 116 SUPERFAMILY Zinc beta-ribbon 4 47 - -
Ahy1g2292 116 Pfam Transcription factor S-II (TFIIS) 74 112 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ahy1g2292 116 Pfam RNA polymerases M/15 Kd subunit 5 33 IPR001529 GO:0006351
Ahy1g2292 116 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Ahy1g2292 116 SMART rpol9cneu 5 57 IPR001529 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2292 Ahy-Chr1 100860816 100863040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2292 K03017 - vvi:100253286 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2640 11 142633407 142635292 Ahy1g2292 1 100860816 100863040 hybridization
Ahy1g2292 1 100860816 100863040 Ahy14g0947 14 15619654 15621849 PCT
Ahy1g2292 1 100860816 100863040 Ahy4g0854 4 14153073 14154902 PCT
Ahy14g0947 14 15619654 15621849 Ahy1g2292 1 100860816 100863040 PCT
Ahy4g0854 4 14153073 14154902 Ahy1g2292 1 100860816 100863040 PCT