Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy4g0785 ATGGCGTCTCTGGCTCAGCAGCTGAGCGCCCTCAGATGGTCTCCACTGCCGTCCACGTCTTCGTCAAGACCAACCACCACCCACAACCGCCGCACCCGCACGCTCCTTCCGGTGGTGTGTTCGGTGGCCTTATCGAATGCGCAAAACCGAGAGAGAGTGAAGCTCAAAGAGCTCTTCGAGCAAGCCTATGAGAGGTGCCGCACTGCTCCCATGGAAGGTGTTTCCTTCACCGTTGATCAGTTCACTGAAGCTCTTGAAAAGTATGATTTTGATTCCGAGGTTGGCACCAAGATTAAGGGCACAGTATTTGCTGTAGATGCAAGTGGAGCTTATGTTGACGTTACTGCAAAATCGACTGCATATTTGCCGCTGCAAGAGGCATGCATCCACCGAATTAAGCATGTGCAAGCAGCAGGCATAGTTCCTGGCTTGAGAGAGGAGTTTGTAGTCATTGGGGAAAATGAAGTTGATGATGGCCTGATCTTGAGTTTAAAGGCTATTCAGTTCGACCTTGCATGGGAACGCTGTAGGCAACTTCAAGCAGAAGATGCAGTTGTCAAGGGTAAGATTGTCAATGGAAACAAGGGTGGATTGGTGGCTGAGGTGGAAGGCCTTAAGGGATTTGTTCCATTCTCACAGATTTCATCGAAATTATCTGGAGAAGAGCTACTTGAGAAGGAACTCCCTCTAAAGTTCGTGGAGGTGGATGAGGAACAGTCCAGACTTATCCTCAGTCACCGTAAAGCCGCCGCTGACAGCCAGGGACAGCTGGGAATTGGATCAGTAGTAACTGGCACTGTTCAAAGCCTAAAGCCATATGGTGCCTTCGTTGACATTGGTGGAATCAGTGGTCTCCTTCATGTCAGTCAGATCAGTCATGATCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATACTAAGTCATGATCGGGAGAGAGGCCGAGTAAGCCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAAGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCCATGGCTCGAGCTGATATGCTTCGGTTCCAGCCAGAGAGTGAATTAACTCTTAGCAATGAAGGGATTTTAGGACCACTTTCTTCAGAGTTGCCTGCAGAGGGAGTGGATTTCAATGAGGTACCCCCAGCTGAAAAAGATTCATGA 1236 0.4854 MASLAQQLSALRWSPLPSTSSSRPTTTHNRRTRTLLPVVCSVALSNAQNRERVKLKELFEQAYERCRTAPMEGVSFTVDQFTEALEKYDFDSEVGTKIKGTVFAVDASGAYVDVTAKSTAYLPLQEACIHRIKHVQAAGIVPGLREEFVVIGENEVDDGLILSLKAIQFDLAWERCRQLQAEDAVVKGKIVNGNKGGLVAEVEGLKGFVPFSQISSKLSGEELLEKELPLKFVEVDEEQSRLILSHRKAAADSQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESELTLSNEGILGPLSSELPAEGVDFNEVPPAEKDS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy4g0785 411 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Ahy4g0785 411 Pfam S1 RNA binding domain 181 247 IPR003029 GO:0003676
Ahy4g0785 411 Gene3D - 176 256 IPR012340 -
Ahy4g0785 411 MobiDBLite consensus disorder prediction 384 411 - -
Ahy4g0785 411 Gene3D - 77 175 IPR012340 -
Ahy4g0785 411 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Ahy4g0785 411 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Ahy4g0785 411 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Ahy4g0785 411 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
Ahy4g0785 411 SUPERFAMILY Nucleic acid-binding proteins 182 250 IPR012340 -
Ahy4g0785 411 PANTHER 30S RIBOSOMAL PROTEIN S1 1 409 - -
Ahy4g0785 411 CDD S1_RPS1_repeat_hs4 260 328 - -
Ahy4g0785 411 Coils Coil 345 365 - -
Ahy4g0785 411 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Ahy4g0785 411 SMART S1_6 93 165 IPR022967 -
Ahy4g0785 411 SMART S1_6 181 247 IPR022967 -
Ahy4g0785 411 SMART S1_6 258 328 IPR022967 -
Ahy4g0785 411 CDD S1_RPS1_repeat_ec2_hs2 183 247 - -
Ahy4g0785 411 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Ahy4g0785 411 Gene3D - 257 336 IPR012340 -
Ahy4g0785 411 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Ahy4g0785 411 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Ahy4g0785 411 SUPERFAMILY Nucleic acid-binding proteins 85 190 IPR012340 -
Ahy4g0785 411 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy4g0785 Ahy-Chr4 11779299 11782441 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy4g0785 K02945 - gmx:100806905 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0873 14 13572457 13575682 Ahy4g0785 4 11779299 11782441 hybridization
Ahy11g2715 11 143768944 143771125 Ahy4g0785 4 11779299 11782441 PCT
Ahy1g2237 1 100166979 100169181 Ahy4g0785 4 11779299 11782441 PCT
Ahy4g0785 4 11779299 11782441 Ahy11g2715 11 143768944 143771125 PCT
Ahy4g0785 4 11779299 11782441 Ahy1g2237 1 100166979 100169181 PCT