Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g0873 ATGGAAAAAATCTCTGCAATGTACAGTACTAATAATTTTGGAAAGACCGTATCCGAGATTAGAATAGAAAATCCCAGTGTAGTGAAGAAGGAAATCATGGCGTCTCTGGCTCAGCAGCTGAGCGCCCTCAGATGGTCTCCACTGCCGTCCACGTCTTCGTCAAGACCAACCACCGCCCACAACCGCCGCACCCGCACGCTCCTTCCGGTGGTGTGTTCGGTGGCCTTATCGAATGCGCAGAACCGAGAGAGAGTGAAGCTCAAAGAGCTCTTCGAGCAAGCCTATGAGAGGTGCCGCACTGCTCCCATGGAAGGTGTTTCCTTCACCGTTGATCAGTTCACTGAAGCTCTTGAAAAGTATGATTTTGATTCCGAGGTTGGCACCAAGATTAAGGGCACAGTATTTGCTGTAGATGCAAGTGGAGCTTATGTTGACGTTACTGCAAAGTCGACTGCATATTTGCCACTGCAAGAAGCATGCATCCACCGAATTAAGCATGTGCAAGCAGCAGGCATAGTTCCTGGCTTGAGAGAGGAGTTTGTAGTCATTGGGGAAAATGAAGTTGATGATGGCCTGATCTTGAGTTTAAAGGCTATTGAGTTCGACCTTGCATGGGAACGCTGTAGGCAACTTCAAGCAGAAGATGCAGTTGTCAAGGGTAAGATTGTCAATGGAAACAAGGGTGGATTGGTGGCCGAGGTGGAAGGCCTTAAGGGATTTGTTCCATTCTCACAGATTTCATCGAAATTATCTGGAGAAGAGCTACTTGAGAAGGAACTCCCTCTAAAGTTCATGGAGGTGGATGAGGAACAGTCCAGACTTATCCTCAGTCACCGTAAAGCCGCTGCTGACAGCCAGGGACAGCTGGGAATTGGATCAGTAGTAACTGGCACTGTTCAAAGCCTAAAGCCATATGGTGCCTTCGTTGACATTGGTGGAATCAGTGGTCTCCTTCACGTCAGTCAGATCAGTCATGATCGTATAACTGATATTGCAAGTGTTCTTCAACCCGGTGATATTCTGAAGGTGATGATACTAAGTCATGATCGGGAGAGAGGCCGAGTAAGCCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAAGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCCATGGCTCGAGCTGATATGCTTCGGTTCCAGCCAGAGAGTGGATTAACTCTTAGCAATGAAGGGATTTTAGGACCACTTTCTTCAGAGTTGCCTGCAGAGGGAGTGGATTTCAATGAGGTACCCCCAGCTGAAGAAGATTCATGA 1332 0.4782 MEKISAMYSTNNFGKTVSEIRIENPSVVKKEIMASLAQQLSALRWSPLPSTSSSRPTTAHNRRTRTLLPVVCSVALSNAQNRERVKLKELFEQAYERCRTAPMEGVSFTVDQFTEALEKYDFDSEVGTKIKGTVFAVDASGAYVDVTAKSTAYLPLQEACIHRIKHVQAAGIVPGLREEFVVIGENEVDDGLILSLKAIEFDLAWERCRQLQAEDAVVKGKIVNGNKGGLVAEVEGLKGFVPFSQISSKLSGEELLEKELPLKFMEVDEEQSRLILSHRKAAADSQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRITDIASVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSNEGILGPLSSELPAEGVDFNEVPPAEEDS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g0873 443 ProSiteProfiles S1 domain profile. 215 279 IPR003029 GO:0003676
Ahy14g0873 443 SUPERFAMILY Nucleic acid-binding proteins 291 370 IPR012340 -
Ahy14g0873 443 MobiDBLite consensus disorder prediction 414 443 - -
Ahy14g0873 443 Pfam S1 RNA binding domain 213 279 IPR003029 GO:0003676
Ahy14g0873 443 Pfam S1 RNA binding domain 291 360 IPR003029 GO:0003676
Ahy14g0873 443 Gene3D - 287 364 IPR012340 -
Ahy14g0873 443 PRINTS Ribosomal protein S1 signature 145 159 IPR035104 -
Ahy14g0873 443 PRINTS Ribosomal protein S1 signature 218 234 IPR035104 -
Ahy14g0873 443 PRINTS Ribosomal protein S1 signature 127 145 IPR035104 -
Ahy14g0873 443 PRINTS Ribosomal protein S1 signature 263 283 IPR035104 -
Ahy14g0873 443 SMART S1_6 125 197 IPR022967 -
Ahy14g0873 443 SMART S1_6 290 360 IPR022967 -
Ahy14g0873 443 SMART S1_6 213 279 IPR022967 -
Ahy14g0873 443 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 33 441 - -
Ahy14g0873 443 SUPERFAMILY Nucleic acid-binding proteins 214 282 IPR012340 -
Ahy14g0873 443 SUPERFAMILY Nucleic acid-binding proteins 117 222 IPR012340 -
Ahy14g0873 443 ProSiteProfiles S1 domain profile. 127 197 IPR003029 GO:0003676
Ahy14g0873 443 Coils Coil 377 397 - -
Ahy14g0873 443 Gene3D - 109 207 IPR012340 -
Ahy14g0873 443 CDD S1_RPS1_repeat_hs4 292 360 - -
Ahy14g0873 443 ProSiteProfiles S1 domain profile. 292 360 IPR003029 GO:0003676
Ahy14g0873 443 CDD S1_RPS1_repeat_ec2_hs2 215 279 - -
Ahy14g0873 443 Gene3D - 208 286 IPR012340 -
Ahy14g0873 443 PANTHER 30S RIBOSOMAL PROTEIN S1 33 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g0873 Ahy-Chr14 13572457 13575682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g0873 K02945 - gmx:100806905 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g0873 14 13572457 13575682 Ahy14g0873 14 13572457 13575682 ECH
Ahy14g0873 14 13572457 13575682 Ahy4g0785 4 11779299 11782441 hybridization
Ahy11g2715 11 143768944 143771125 Ahy14g0873 14 13572457 13575682 PCT
Ahy1g2237 1 100166979 100169181 Ahy14g0873 14 13572457 13575682 PCT
Ahy14g0873 14 13572457 13575682 Ahy11g2715 11 143768944 143771125 PCT
Ahy14g0873 14 13572457 13575682 Ahy1g2237 1 100166979 100169181 PCT