Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3421 ATGATAGGTGGCTTTAGCTTAAAGAGCTTCACATACATTTTTGTAATTGCAATTCTTATTTGGTGTTCAAATTTTGAGTCATGCATTGCAAGGAGAGGGAGGCATTGGAGGCATAACAATAATAGAGCTTTCTCTTCTTCTCTTATGAAGAAAAAAGTCAAGAATTATGGTAATCATAATAATAATGGTGGAGGCTCAAACTCAAAACCAAAACCAAAGTCTCCATCATCACCAAAGTCTACTCCACCACCATATAAAATCACTCCTTCATTACCACCACGAATTCCCAACCCAGATTACCCTCCAAGTCCTCCAACAAAAGGTTACAACAATGGTGGCTCTTCTTCTACCACATTTAATGTGCTAGATTTTGGAGCTAAGGGTGATGGAAATTGTGATGATACCAAGGCATTCGAAGCTGCGTGGGCAGCAGCATGTAAGGTAGAGGCATCAACCATGGTGGTACCAGCAGATTACACCTTCTACGTGGGGCCCATCTCATTCTCGGGCCCATACTGCAAGCCCAACATCGTTTTCCAGCTTGATGGCACCATTGTTGCTCCAACAAACTCCAAAGTTTGGGGTGGAGGAATGTTCCAGTGGCTGGAATTCTCAAAGCTAGTGGGAATCACCATTCAAGGAAATGGTGTCATTGATGGAAGAGGCTCAGTTTGGTGGAAAGACCAACCATATGATGACCCTATAGATGATGAAGAAAAGCTCATAGTCCCATTGAACCACACAATGGGGAAGCCACCACCAATGCCAGTTGAAAGTGAGCTTGGAGTAAAGATGCCAGGCATCAAGCCAACTGCATTAAGGTTCTACGGGAGTTTTTACCCAACTGTCACAGGCATAACTATTCAGAATAGTCCACAATGCCATCTCAAGTTTGACAGCTGCAATGGAGTCCTGGTCCATGATGTGACCATATCATCGCCGGGCGATAGCCCCAACACAGATGGAATTCACCTTCAGAACTCTAAAGATGTTCTCATCTATAGCAGCAACCTTGGATGTGGAGATGATTGTATTTCCATACAAACTGGGTGCTCAAATGTATATGTACACAATGTCAATTGTGGACCAGGACATGGAATCAGCATTGGGGGCCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGTTCTGTGCAAGGAGTACAATTCTCAAACATTCAAGTTTCCGAAGTTCAGCTCCCTATTGTGATCGATCAATTCTACTGCGATAAAAAATCCTGCTCGAACCAAACAGCCGCTGTGGCGCTAGCAGGAATCAATTATGAAGAGATAAAGGGAACATACACAGTTAAGCCAGTACACTTTGCATGTAGTGATAGCCTGCCTTGCGTTGATGTTTCTTTGACCTCAATCGAGTTAAAACCAGTTCAAGAACAATACCACCTGTATGATCCATTCTGCTGGCAAACTTATGGTGAATTAAAAACTCCGACACTGCCACCAATTTCTTGCCTTCAGATTGGGAAGCCGCCGAACAATCGGATTCAGACAGATCGTGATTTATGTTGA 1605 0.4349 MIGGFSLKSFTYIFVIAILIWCSNFESCIARRGRHWRHNNNRAFSSSLMKKKVKNYGNHNNNGGGSNSKPKPKSPSSPKSTPPPYKITPSLPPRIPNPDYPPSPPTKGYNNGGSSSTTFNVLDFGAKGDGNCDDTKAFEAAWAAACKVEASTMVVPADYTFYVGPISFSGPYCKPNIVFQLDGTIVAPTNSKVWGGGMFQWLEFSKLVGITIQGNGVIDGRGSVWWKDQPYDDPIDDEEKLIVPLNHTMGKPPPMPVESELGVKMPGIKPTALRFYGSFYPTVTGITIQNSPQCHLKFDSCNGVLVHDVTISSPGDSPNTDGIHLQNSKDVLIYSSNLGCGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVQFSNIQVSEVQLPIVIDQFYCDKKSCSNQTAAVALAGINYEEIKGTYTVKPVHFACSDSLPCVDVSLTSIELKPVQEQYHLYDPFCWQTYGELKTPTLPPISCLQIGKPPNNRIQTDRDLC* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3421 534 MobiDBLite consensus disorder prediction 54 112 - -
Ahy3g3421 534 Gene3D - 109 518 IPR012334 -
Ahy3g3421 534 MobiDBLite consensus disorder prediction 75 105 - -
Ahy3g3421 534 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 7 524 - -
Ahy3g3421 534 MobiDBLite consensus disorder prediction 54 74 - -
Ahy3g3421 534 Pfam Glycosyl hydrolases family 28 148 230 IPR000743 GO:0004650|GO:0005975
Ahy3g3421 534 Pfam Glycosyl hydrolases family 28 269 486 IPR000743 GO:0004650|GO:0005975
Ahy3g3421 534 PANTHER - 7 524 - -
Ahy3g3421 534 SUPERFAMILY Pectin lyase-like 116 530 IPR011050 -
Ahy3g3421 534 SMART pbh1 328 349 IPR006626 -
Ahy3g3421 534 SMART pbh1 301 327 IPR006626 -
Ahy3g3421 534 SMART pbh1 381 402 IPR006626 -
Ahy3g3421 534 SMART pbh1 351 371 IPR006626 -
Ahy3g3421 534 SMART pbh1 410 431 IPR006626 -
Ahy3g3421 534 SMART pbh1 207 228 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3421 Ahy-Chr3 132981717 132986721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3421 5 534 Glycoside Hydrolase AT1G60590 65.666 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3421 - - gmx:732602 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1413 15 25076896 25083860 Ahy3g3421 3 132981717 132986721 hybridization