Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1413 ATGAGTAGATTGAGTATGAAGAACTTGACCTACATGCTTGTCATTGCAATTCTTATCTGGTCTTCAAGTTTTGAGTCCTGCATTGCAAGAAGAGGCAAGCATTGGAGACATACCAGAGCTTTCTCATCTTCTCTGTATAAGAAGAAAGGTAAGAGTTATTATGGTCATAGTCATAGTCACAATCACAATCACAATCACCATGGTGGAGGATCATCAAAGTCAAAGCCTCCAACACATAAAAAGAGTACTCCATCACCACCTAATCCTCCACCATACACAACCATTCCACCACCACCACCACCACCACCACCAAAGAGTCACAAGCCGAAAGTGGGCGTACCCTCGACTCCGCCGCCGCCACCGAAAGATTGCAATGGTGGCCATTCTATCATATTCAATGTGCTGGATTTTGGAGCTAAGGGAGATGGAAGCACTGATGATACAAAGGCATTCCAAGCCACATGGGGAGCAGCTTGCAAGGTAGAGGCATCAACAATGCTAGTCCCAGCAGATTACACCTTCTATGTGGGACCTATGTCATTCTCAGGCCCATATTGCAAACCAAGCATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAATGCAAATGCTTGGTCTGGAGGACTGCTACAATGGCTGGAGTTTACAAAGCTGGTGGGAATCACCATTCAAGGAAAGGGTGTCATTGATGGAAGAGGCTCAGTTTGGTGGCAAGACCAGCCATTTGATAACCCTATAGATGGTGAAGAAAAGCTCATAGTCCCTTTAAACCACACATGGAAACCACCGGTGCCGGTTCAGAGTGCTATGGGGAGGAAAATGCCAAGCATCAAGCCAACTGCATTAAGATTTTATGGGAGTTTTAACGCAGTAGTGACAGGCATAACAATTCAAAATAGTCCTCAATGCCACCTCAAGTTTGACAACTGCAATGGGGTTCTGGTCCATGATGTTAGCATATCATCCCCTGGTAACAGCCCAAATACAGATGGAATTCACCTTCAGAATTCCAAAGATGTGATGATTCATACCAGCAACTTAGCATGTGGTGATGACTGTATTTCCATACAAACTGGGTGCTCAAATGTATTTGTACACGATGTCAACTGTGGGCCAGGACATGGAATCAGCATTGGAAGCTTAGGGAAGGATAACACCAGAGCCTGTGTCTCAAACATCACTGTCAGAGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAGACATGGCAGGGTGGTTCAGGATCAGTGCAGGGGGTACTATTCTCAAACATACAGGTTTCTGAAGTTCAACTCCCTATTGTGATTGACCAATTCTATTGTGACAAAAGAACATGCACAAACCACACATCAGCTGTGTCTCTGGAAGGAATCAACTATGACAGAATTAAGGGAACTTACACGGTAAAGCCGGTTCACTTCGCATGCAGTGATAGCCTGCCATGCGTGGACGTGTCGTTAAACAAGGTGGAGCTGAAACCAGTTCAGGAGCAATACCATCTATGTAATCCATTCTGCTGGCAGACTTATGGAGAACTGAGATCCCCCACTGTCCCTACTATCGATTGTTTACAGATCGGGAAGCCATCGAGCAACCGGATTCAAACCGATCATGATATCTTTATCTGA 1641 0.4479 MSRLSMKNLTYMLVIAILIWSSSFESCIARRGKHWRHTRAFSSSLYKKKGKSYYGHSHSHNHNHNHHGGGSSKSKPPTHKKSTPSPPNPPPYTTIPPPPPPPPPKSHKPKVGVPSTPPPPPKDCNGGHSIIFNVLDFGAKGDGSTDDTKAFQATWGAACKVEASTMLVPADYTFYVGPMSFSGPYCKPSIVFQLDGTIIAPTNANAWSGGLLQWLEFTKLVGITIQGKGVIDGRGSVWWQDQPFDNPIDGEEKLIVPLNHTWKPPVPVQSAMGRKMPSIKPTALRFYGSFNAVVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGNSPNTDGIHLQNSKDVMIHTSNLACGDDCISIQTGCSNVFVHDVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCTNHTSAVSLEGINYDRIKGTYTVKPVHFACSDSLPCVDVSLNKVELKPVQEQYHLCNPFCWQTYGELRSPTVPTIDCLQIGKPSSNRIQTDHDIFI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1413 546 ProSitePatterns Polygalacturonase active site. 369 382 IPR000743 GO:0004650|GO:0005975
Ahy15g1413 546 Gene3D - 124 540 IPR012334 -
Ahy15g1413 546 MobiDBLite consensus disorder prediction 80 124 - -
Ahy15g1413 546 MobiDBLite consensus disorder prediction 52 69 - -
Ahy15g1413 546 SMART pbh1 362 382 IPR006626 -
Ahy15g1413 546 SMART pbh1 392 413 IPR006626 -
Ahy15g1413 546 SMART pbh1 339 360 IPR006626 -
Ahy15g1413 546 SMART pbh1 312 338 IPR006626 -
Ahy15g1413 546 SMART pbh1 421 442 IPR006626 -
Ahy15g1413 546 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 535 - -
Ahy15g1413 546 SUPERFAMILY Pectin lyase-like 130 544 IPR011050 -
Ahy15g1413 546 MobiDBLite consensus disorder prediction 52 125 - -
Ahy15g1413 546 Pfam Glycosyl hydrolases family 28 161 242 IPR000743 GO:0004650|GO:0005975
Ahy15g1413 546 Pfam Glycosyl hydrolases family 28 277 498 IPR000743 GO:0004650|GO:0005975
Ahy15g1413 546 PANTHER - 6 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1413 Ahy-Chr15 25076896 25083860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1413 4 544 Glycoside Hydrolase AT1G60590 64.781 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1413 - - aip:107643352 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1413 15 25076896 25083860 Ahy15g1413 15 25076896 25083860 ECH
Ahy15g1413 15 25076896 25083860 Ahy3g3421 3 132981717 132986721 hybridization