Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2945 ATGGAATATCAGTATCTTGTGGGAGTGGGAGGGATCTTGGTTAGCACTTTGGTGTTTTTGTTTGCGGTCTATAGTTTTTCAGAGAAGAGGAAGATCACCGGTTCAAGTTCATCAATATATGTTAAGTTTAAAGGAGGGTCTGCAGCAGAGGCATCACAAGATGGAGGAGCATACACTCAAGAGGCTGAAGAAAGCAGAGATGTTATCATTGTCGGCGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACGCTTGGAAAGGATGGAAGGCAAGTGCATGTGATTGAAAGAGACTTGAATGAACCTGACAGAATTGTTGGTGAATTGCTTCAGCCTGGGGGATATCTCAAGTTACTTGAATTGGGTCTTCAGGATTGTGTAGACCAGATTGATGCTCAGAAAGTGTTTGGCTATGCTCTTTACAAGGATGGAAAGAACACCAGGCTGTCTTATCCCTTGGAAAATTTTGACAGTGATGTTTCTGGTAGAAGCTTTCACAACGGCCGCTTCATTCAGAGAATGCGAGAAAAGGCTTCATCTCTTCCAAATGTAAAATTGGAGCAAGGAACTGTCACATCTCTACTTGAAGAAAATGGAACCATCAAAGGTGTGCACTATAAAACCAAGAGTGGACAAGAGTTCATAGCAAAGGCTCCCCTGACCATAGTATGTGATGGATGCTTTTCCAATTTGAGGCGTTCTCTTTGCAATCCCCAGGTTGAAGTACCTTCTCATTTTGTAGGCCTTGTCCTAGAGAATTGCAACCTGCCATATGCAAATCATGGACATGTTATCTTGGGTGATCCTTCACCAATTCTGTTTTATCCAATCAGCAGCACCGAGATTCGATGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCTGTTGGTAATGGTGATATGGCTCATTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTGGAGAGTTGTATAATTCTTTTATAGCAGCAGTTGATAAGGGTAACATAAGAACAATGCCAAATAGAAGCATGCCTGCTTGGCCTTACCCCACTCCCGGCGCGCTTCTGATGGGAGATGCCTTCAATATGCGCCACCCTTTAACCGGAGGAGGAATGACCGTGGCCTTGTCTGACATTGTTGTGCTAAGGGATCTACTTAAGCCTCTGCATGATCTCCATGATGCTGCTTCTCTTTGCAACTATCTTGAATCTTTCTACACCTTGCGCAAGCCAGTGGCATCTACAATAAACACTTTAGCTGGTGCATTATACAAGGTGTTTTGTGCATCACCTGATCCTGCTAGGAAAGAAATGCGCCAGGCATGTTTTGATTATCTGAGCCTTGGAGGTGTTTTCTCAAATGGACCAATAGCTCTACTATCCGGCCTAAATCCGCGGCCGCTCAGCCTGGTCGCTCATTTCTTTGCTGTTGCTATATATGGTGTCGGCCGCCTGCTGATACCATTTCCTTCTCCCAATCGGATTTGGATCGGAGCTAGACTGATTTCAGGTGCATCAGGCATCATTTTCCCCATTATCAAGGCCGAAGGAGTAAGACAAATGTTCTTCCCTGCAACTGTGCCGGCATATTACAGAACCCCTCCTATTCATTCCCATCATTGA 1602 0.4494 MEYQYLVGVGGILVSTLVFLFAVYSFSEKRKITGSSSSIYVKFKGGSAAEASQDGGAYTQEAEESRDVIIVGAGVAGAALAYTLGKDGRQVHVIERDLNEPDRIVGELLQPGGYLKLLELGLQDCVDQIDAQKVFGYALYKDGKNTRLSYPLENFDSDVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGTIKGVHYKTKSGQEFIAKAPLTIVCDGCFSNLRRSLCNPQVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSVGNGDMAHYLKTVVAPQVPGELYNSFIAAVDKGNIRTMPNRSMPAWPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHDLHDAASLCNYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLLIPFPSPNRIWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPIHSHH* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2945 533 Gene3D - 54 420 IPR036188 -
Ahy3g2945 533 Pfam NAD(P)-binding Rossmann-like domain 70 96 - -
Ahy3g2945 533 PANTHER SQUALENE MONOOXYGENASE 1 530 IPR040125 GO:0004506|GO:0016126
Ahy3g2945 533 Pfam Squalene epoxidase 216 489 IPR013698 GO:0004506|GO:0016021|GO:0050660
Ahy3g2945 533 SUPERFAMILY FAD/NAD(P)-binding domain 66 441 IPR036188 -
Ahy3g2945 533 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 67 89 - -
Ahy3g2945 533 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 359 - -
Ahy3g2945 533 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 359 375 - -
Ahy3g2945 533 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 216 231 - -
Ahy3g2945 533 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2945 Ahy-Chr3 125874296 125877497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2945 22 528 Miscellaneous Gene Families AT1G58440 76.726 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2945 K00511 - gmx:100800329 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy3g2945 3 125874296 125877497 Ahy20g0644 20 7007757 7011490 PCT
Ahy3g2945 3 125874296 125877497 Ahy10g0443 10 4336177 4339727 PCT
Ahy20g0644 20 7007757 7011490 Ahy3g2945 3 125874296 125877497 PCT
Ahy10g0443 10 4336177 4339727 Ahy3g2945 3 125874296 125877497 PCT