Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0443 ATGTCTCACAATTTCACCAATCCCTTGTTCTTATTCTTGGCAATGGATTATATGTTCATTTTTGGAAGTGTCATAGCTTCTAGTTTGGTGCTTGTGCTTTTTCTGTACGGTTCTGTATCAAACAAGAGAAAATCCAGTGATCCAAGTGCAACAACACATGCACAAAGTATAAAGACATCAGAAAATGGTACATGGACTCCACCAGAAGTCTCAGAAGGATGTGATGACATCATCATTGTAGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTTCACTCTTGGAAAGGATGGAAGACGAGTTCATGTTATCGAAAGGGACTTGAATGAACAAGACAGGATTGTGGGTGAATTGCTTCAACCTGGGGGCTATCTTAAGCTGATTGAGTTAGGACTTGAGGATTGTGTGGATGAAATTGATGCACAACAAGTCTTTGGCTATGCCCTTTACAAAGATGAGAAAAATACCAAGCTCTCTTATCCCTTGGAAAAGTTTAGTTCTGATATTTCCGGTAAAAGCTTTCACAATGGCCGTTTCATCCAAAGAATGCGAGCGAAGGCTTCTTCTCTTCCCAATGTAAAGTTAGAACAAGGAACTGTCACATCTCTATTAGAAGAAAATGGAATTGTCAAAGGAGTTCACTACAAAACTAAGAGTGGAGAAGAGCTTACAGCAAAGGCTCCTCTCACCATAGTTTGTGATGGTTGTTTTTCCAACTTAAGGCGTTCTCTTTGCGATCCTAAGGTTGATCTACCATCTTATTTTGTTGGTCTGATCCTTGAGAACTGTAATCTTCCATATGCAAACCATGGACATGTTATCTTAGGTGATCCTTCACCAATCTTATTTTATCCAATCAGCAGCACTGAAATTCGGTGTTTGGTGGATGTGCCTGGCCAAAAACTACCTTCTCTTGGCAATGGCGACATGGCACGTTATCTGAAAACAGTGGTGGCTCCTCAGGTGCCTTCAGAGCTGCATGATTCTTTTATAGCAACAGTGGAAAAAGGGAACATAAGAAGCATGCCAAATAGAAGCATGCCTGCATCACCATATCCAACACCTGGTGCTCTTCTAATGGGTGACGCATTCAACATGCGTCACCCTTTAACAGGAGGGGGAATGACTGTGGCCTTGTCTGACATTGTTCTGCTAAGAGATCTTCTTAGGCCTTTGCGCGATCTCCATGATTCTACTGCTCTTTGCAAGTATCTTGAATCATTCTACACTCTACGTAAGCCAGTGGCATCAACCATAAACACATTGGCAGGTGCATTGTACAAGGTGTTCTGCGCATCACCTGATCCGGCTAGGAAGGAAATGAGGCAAGCATGTTTTGATTATTTGAGACTTGGAGGCGTGTTCTCTCAGGGACCAATAGCTCTACTCTCTGGTCTCAATCCTCGCCCATTAAGCTTGGTTCTCCATTTCTTTGCTGTCGCTATATATGGCGTTGGCCGCTTGCTCGTGCCATTTCCTTCACCAACACGCATGTGGATTGGAGCTAGATTGATCTCTGGAGCATCAGGTATAATCTTCCCTATTATCAAGGCTGAAGGAGTTAGACAAATGTTCTTCCCAGTAACTGTGCCAGCATACTACAGAACTCCCCCTGTTAATTTGCAGAACTAA 1629 0.4316 MSHNFTNPLFLFLAMDYMFIFGSVIASSLVLVLFLYGSVSNKRKSSDPSATTHAQSIKTSENGTWTPPEVSEGCDDIIIVGAGVAGAALAFTLGKDGRRVHVIERDLNEQDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDEKNTKLSYPLEKFSSDISGKSFHNGRFIQRMRAKASSLPNVKLEQGTVTSLLEENGIVKGVHYKTKSGEELTAKAPLTIVCDGCFSNLRRSLCDPKVDLPSYFVGLILENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGDMARYLKTVVAPQVPSELHDSFIATVEKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLRDLHDSTALCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLRLGGVFSQGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLVPFPSPTRMWIGARLISGASGIIFPIIKAEGVRQMFFPVTVPAYYRTPPVNLQN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0443 542 Pfam NAD(P)-binding Rossmann-like domain 79 105 - -
Ahy10g0443 542 Pfam Squalene epoxidase 225 498 IPR013698 GO:0004506|GO:0016021|GO:0050660
Ahy10g0443 542 MobiDBLite consensus disorder prediction 41 67 - -
Ahy10g0443 542 Gene3D - 75 454 IPR036188 -
Ahy10g0443 542 SUPERFAMILY FAD/NAD(P)-binding domain 76 450 IPR036188 -
Ahy10g0443 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 368 - -
Ahy10g0443 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 76 98 - -
Ahy10g0443 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 225 240 - -
Ahy10g0443 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 368 384 - -
Ahy10g0443 542 PANTHER SQUALENE MONOOXYGENASE-RELATED 15 541 - -
Ahy10g0443 542 PANTHER SQUALENE MONOOXYGENASE 15 541 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0443 Ahy-Chr10 4336177 4339727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0443 76 537 Miscellaneous Gene Families AT1G58440 79.654 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0443 K00511 - gmx:100796946 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0644 20 7007757 7011490 Ahy10g0443 10 4336177 4339727 hybridization
Ahy3g2945 3 125874296 125877497 Ahy10g0443 10 4336177 4339727 PCT
Ahy10g0443 10 4336177 4339727 Ahy3g2945 3 125874296 125877497 PCT