Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2648 ATGATGGCCGAGGAAGCTCCAAAGAACCAAGAGGCGGTGGTGGTTACACATGTTCCGCCGCCTGAGGCCGAGGAAGAGAAGAAGCAGCCCGTGACTTTGGGCACTCACCTCTCCAAGCTTCCGGAATCCGGAACCTTCAAGGAAGAAAGCACCAAGCTTTCTGATCTCCCTGAGACCCACAACAAGGCGCTACAAGAACTCAAGAGCCTCGTTCAGGAAGCTCTTAATAACCACCAATTCTCTGTCCCTAACCAACCCAAGCAACAACACAAGCCTGAAGAAGCTGTAACTGCTGAGAAAGAAAGTGAAACGAAAGAGGAAGAAAAAGCTTCTGAACCTGCCACGAAAACAGACAACGAGGACGAGGTGGGAGAAGAAGTGAAAGAAACCGCAGTGGTTGAGGTTGAAGAAAAGGTGGTGGCTGCTCCATCCATTGATGATGATGGTGCAAAAACTGTTGAGGCTATTGAAGAGACCGTTGTTGCTGTCTCTGTTTCAACAACAGAAAGTCCACATCCACCGGCACAGAAAGTTTGCCAAGAAGCCAAGGAGGACGTGCCATTGCCACCGGAAGAGGTATCCATTTGGGGGATACCACTTCTTGCAGACGAAAGAAGCGACGTCATCCTCTTGAAGTTCCTGCGCGCCAGAGACTTCAAAGTGAAAGACGCTTTCGCCATGATGAAGAATACAATCCGGTGGAGGAAAGAGTTCGGAATCGATGAGCTAATGGAGGAGAATTTAGATTGTGATGAACTGGAGAAGGTGGTGTTCATGCATGGATTCGACAAAGAAGGACACCCTGTTTGTTACAACATATTCGGCGAGTTCGAGAACAAGGAGCTGTATAAGAAGACATTCTCTGATGAGGAGAAGAGGCAGAGGTTCCTGAGATGGAGGATTCAGTTCTTGGAGAAGAGTATTAGGAAACTGGACTTCAATCCTGGCGCCATTTCCACCATTGTTCAGGTCAATGATCTCAAGAACTCGCCTGGTCTTGCCAAGTGGGAGCTTAGACAAGCTACCAAAGAAGCCCTTCAGCTACTTCAGGACAATTACCCTGAATTTGTGGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACCTTGCTGTGAATAGAATGATAAGCCCTTTCCTTACCCAGAGAACCAAGAGCAAGTTTGTGTTTGCAGGGCCTTCAAAATCAGCAGACACCCTTTTGAGATACATAAGTGCAGAGCAACTTCCGGTGAAGTATGGTGGACTAAGCAAAGAAGGGGAGTTCGGAAACTCCGATGCTGTTACGGAAATCACAGTGAAGCCAGCAACGAAACATACGGTGGAATTTCCTGTTACTGAGAAATGTTTGCTTTCTTGGGAGCTGAGAGTTATAGGGTGGGAAGTAAGCTATGGTGTTGAATTTGTTCCAAGCTCGGAAGGTAGCTACACAGTGATTATTCAGAAGGCTAGAAAGGTTTCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTCAAGGTTGGTGAGACTGGAAATGTTGTCCTCACCATTGATAATCCAACCTCTAAGAAGAAGAAGCTCCTCTATCGCTTGAAGACCAAGACTTCCCCTTCTGATTGA 1599 0.4709 MMAEEAPKNQEAVVVTHVPPPEAEEEKKQPVTLGTHLSKLPESGTFKEESTKLSDLPETHNKALQELKSLVQEALNNHQFSVPNQPKQQHKPEEAVTAEKESETKEEEKASEPATKTDNEDEVGEEVKETAVVEVEEKVVAAPSIDDDGAKTVEAIEETVVAVSVSTTESPHPPAQKVCQEAKEDVPLPPEEVSIWGIPLLADERSDVILLKFLRARDFKVKDAFAMMKNTIRWRKEFGIDELMEENLDCDELEKVVFMHGFDKEGHPVCYNIFGEFENKELYKKTFSDEEKRQRFLRWRIQFLEKSIRKLDFNPGAISTIVQVNDLKNSPGLAKWELRQATKEALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSADTLLRYISAEQLPVKYGGLSKEGEFGNSDAVTEITVKPATKHTVEFPVTEKCLLSWELRVIGWEVSYGVEFVPSSEGSYTVIIQKARKVSSSEEPVLCNSFKVGETGNVVLTIDNPTSKKKKLLYRLKTKTSPSD* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2648 532 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 246 421 IPR001251 -
Ahy3g2648 532 PANTHER PATELLIN-1 8 532 IPR044834 GO:0008289
Ahy3g2648 532 SUPERFAMILY CRAL/TRIO N-terminal domain 52 247 IPR036273 -
Ahy3g2648 532 SMART CRAL_TRIO_N_2 206 231 IPR011074 -
Ahy3g2648 532 Pfam CRAL/TRIO domain 255 415 IPR001251 -
Ahy3g2648 532 MobiDBLite consensus disorder prediction 92 125 - -
Ahy3g2648 532 Gene3D - 239 430 IPR036865 -
Ahy3g2648 532 MobiDBLite consensus disorder prediction 74 91 - -
Ahy3g2648 532 MobiDBLite consensus disorder prediction 42 60 - -
Ahy3g2648 532 Gene3D GOLD domain 431 526 - -
Ahy3g2648 532 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 426 525 IPR036598 -
Ahy3g2648 532 PRINTS Cellular retinaldehyde-binding protein signature 373 392 - -
Ahy3g2648 532 PRINTS Cellular retinaldehyde-binding protein signature 209 231 - -
Ahy3g2648 532 MobiDBLite consensus disorder prediction 1 60 - -
Ahy3g2648 532 PANTHER PATELLIN-3 PROTEIN 8 532 - -
Ahy3g2648 532 SUPERFAMILY CRAL/TRIO domain 256 418 IPR036865 -
Ahy3g2648 532 Gene3D - 176 237 - -
Ahy3g2648 532 CDD SEC14 252 416 IPR001251 -
Ahy3g2648 532 SMART sec14_4 251 418 IPR001251 -
Ahy3g2648 532 Pfam CRAL/TRIO, N-terminal domain 191 230 IPR011074 -
Ahy3g2648 532 ProSiteProfiles GOLD domain profile. 425 526 IPR009038 -
Ahy3g2648 532 MobiDBLite consensus disorder prediction 74 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2648 Ahy-Chr3 117696071 117699848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2648 210 410 Acyl Lipid Metabolism Gene Families AT5G47730 27.962 1.67e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2648 - - gmx:100804544 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2986 13 120357417 120360641 Ahy3g2648 3 117696071 117699848 hybridization
Ahy3g2648 3 117696071 117699848 Ahy18g2844 18 132909926 132913461 PCT
Ahy18g2844 18 132909926 132913461 Ahy3g2648 3 117696071 117699848 PCT