Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2620 ATGTTATGTGTGTGGCATGTATGTTATATCTACCAAGTTGCTACAACACACAAACTAAAGTTAGAAGAGTTTGTAGAAAGGGCTACCTACACAATCATATCTTTGCATCCTTTACAACAAAACAGAAAGAGAAGAATGGCTTTTTGGAGATCCACAACACTTGAATCCGACAAACACGACTTGAATACCTATGCAAATGCTACAACAACAACAACAACAACAACAACAACAACAACAACGGACAAGGACGCCACTACTACTCATGCTGAGCTCACCAAAATCCCTCTTATGAGAGCCTTCATTGAAACGCACGATCCCTCTTCTATGCATGAAGTGGATGATTTGATGATGAGAAGATTTCTGCGTGCTCGTGATTCAGATGTTGACAAGGCTTGTGCAATGCTCCTCAAGTGCTTGAAATGGAGGCGCTCCTTTGTTCCAAATGGTTTCTTTTCTGTGTCAGAGGTTCCCAATGAAATCTCACAGGACAAGGTCTTCGCCCAAGGACATGACAACAGAGGTCGACCAATCGCTGTTATCTTTGGTGCCAGACATTTCCAAAACAAACAGGGTGGTCTCGATGAATTCAAACGTTTTGTTGTGTATGCATTTGACAAGTTATGTGCCAGTATGCCAGCTGGGCAAGAAAAATTTGTGGGCATTGCAGAACTTAAGGGATGGGGATACTCTAACAGTGACGTGCGTGGATACATTACCGCTCTAAGCATTTTGCAGGATTACTACCCTGAAAGATTAGGCAAGTTGTTTATTCTGCACGCACCTTACATATTTATGAAAGTGTGGAAAGTCATTTACCCCTTCATTGACAACAATACCAGGAAAAAGATTGTATTTGTGGAGAACAAGAAGCTGAAACCAACACTGCTAGAAGATATAGAGGAAAGTCAGCTTCCAGAGATATATGGAGGCCAATTGCCATTAGTCCCAATACAAGATAGCTGA 963 0.4164 MLCVWHVCYIYQVATTHKLKLEEFVERATYTIISLHPLQQNRKRRMAFWRSTTLESDKHDLNTYANATTTTTTTTTTTTTDKDATTTHAELTKIPLMRAFIETHDPSSMHEVDDLMMRRFLRARDSDVDKACAMLLKCLKWRRSFVPNGFFSVSEVPNEISQDKVFAQGHDNRGRPIAVIFGARHFQNKQGGLDEFKRFVVYAFDKLCASMPAGQEKFVGIAELKGWGYSNSDVRGYITALSILQDYYPERLGKLFILHAPYIFMKVWKVIYPFIDNNTRKKIVFVENKKLKPTLLEDIEESQLPEIYGGQLPLVPIQDS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2620 320 Pfam CRAL/TRIO domain 164 310 IPR001251 -
Ahy3g2620 320 SUPERFAMILY CRAL/TRIO N-terminal domain 73 149 IPR036273 -
Ahy3g2620 320 PANTHER OS03G0850700 PROTEIN 65 320 - -
Ahy3g2620 320 CDD SEC14 165 311 IPR001251 -
Ahy3g2620 320 Gene3D - 40 319 IPR036865 -
Ahy3g2620 320 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 153 316 IPR001251 -
Ahy3g2620 320 SUPERFAMILY CRAL/TRIO domain 156 313 IPR036865 -
Ahy3g2620 320 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 65 320 - -
Ahy3g2620 320 SMART sec14_4 159 313 IPR001251 -
Ahy3g2620 320 SMART CRAL_TRIO_N_2 113 138 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2620 Ahy-Chr3 117038000 117042150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2620 117 283 Acyl Lipid Metabolism Gene Families AT5G47730 28.796 1.97e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2620 - - aip:107634602 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2959 13 119495930 119501946 Ahy3g2620 3 117038000 117042150 hybridization
Ahy3g2620 3 117038000 117042150 Ahy18g2894 18 133660775 133665350 PCT
Ahy18g2894 18 133660775 133665350 Ahy3g2620 3 117038000 117042150 PCT