Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2959 ATGGCTTTTTGGAGATCCACAACACTTGAATCCAACAAACACGACTTGAATACCTATGCAAATCCAACAACAACAATGACGACGACCACGACGAGTACGGCAACAACAACAACAGACAAGGAAGCCACTACTACTCATGCTGAGCTCACCAAAATCCCTCTTATGAGAGCCTTCATTGAAACGCACGATCCCTCTTCTATGCATGAAGTGGATGATTTGATGATGAGAAGATTTCTGCGTGCTCGTGATTCAGATGTTGACAAGGCTTCTGCAATGCTCCTCAAGTGCTTGAAATGGAGGCGCTCCTTTGTTCCAAATGGTTTCTTTTCTGTGTCAGAGGTTCCCAATGAAATCACACAGGACAAGGTCTTCGCCCAAGGACATGACAACAGAGGTCGACCAATCGCTGTTATCTTTGGTGCCAGACATTTCCAAAACAAACAGGGTGGTCTCGATGAATTCAAACGTTTTGTTGTGTATGCATTTGACAAGTTATGTGCCAGTATGCCAGATGGGCAAGAAAAATTTGTGGGCATTGCAGAACTTAAGGGATGGGGATACTCTAACAGTGACGTGCGTGGATACATTACCGCTCTAAGCATTTTGCAGGATTACTACCCTGAAAGATTAGGCAAGTTGTTTATTCTGCACGCACCTTACATATTTATGAAAGTGTGGAAAGTCATTTACCCCTTCATTGACAACAATACCAGGAAAAAGATTGTATTTGTGGAGAACAAGAAGCTGAAATCAACACTGCTAGAAGATATAGAGGAGAGTCAGCTCCCAGAGATATATGGAGGCCAATTGCCATTAGTCCCAATACAAGATAGCTGA 837 0.4313 MAFWRSTTLESNKHDLNTYANPTTTMTTTTTSTATTTTDKEATTTHAELTKIPLMRAFIETHDPSSMHEVDDLMMRRFLRARDSDVDKASAMLLKCLKWRRSFVPNGFFSVSEVPNEITQDKVFAQGHDNRGRPIAVIFGARHFQNKQGGLDEFKRFVVYAFDKLCASMPDGQEKFVGIAELKGWGYSNSDVRGYITALSILQDYYPERLGKLFILHAPYIFMKVWKVIYPFIDNNTRKKIVFVENKKLKSTLLEDIEESQLPEIYGGQLPLVPIQDS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2959 278 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 23 278 - -
Ahy13g2959 278 CDD SEC14 123 269 IPR001251 -
Ahy13g2959 278 Pfam CRAL/TRIO domain 122 268 IPR001251 -
Ahy13g2959 278 Gene3D - 9 277 IPR036865 -
Ahy13g2959 278 SUPERFAMILY CRAL/TRIO N-terminal domain 25 107 IPR036273 -
Ahy13g2959 278 SMART CRAL_TRIO_N_2 71 96 IPR011074 -
Ahy13g2959 278 SUPERFAMILY CRAL/TRIO domain 113 271 IPR036865 -
Ahy13g2959 278 MobiDBLite consensus disorder prediction 14 43 - -
Ahy13g2959 278 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 111 274 IPR001251 -
Ahy13g2959 278 PANTHER OS03G0850700 PROTEIN 23 278 - -
Ahy13g2959 278 SMART sec14_4 117 271 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2959 Ahy-Chr13 119495930 119501946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2959 75 263 Acyl Lipid Metabolism Gene Families AT5G47730 27.670 2.13e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2959 - - aip:107634602 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2959 13 119495930 119501946 Ahy3g2620 3 117038000 117042150 hybridization
Ahy13g2959 13 119495930 119501946 Ahy18g2894 18 133660775 133665350 PCT
Ahy18g2894 18 133660775 133665350 Ahy13g2959 13 119495930 119501946 PCT