Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2546 ATGGCCGAACCTGATTCCGAAACGCCTGAACAAACAAATACCCAGATAAGCACCAACGCAGAATGCACACCTGAACAACAACTTCAGATTGTAGACAAAGCTATTGATCGCCCTGAGTGGTTACCTGATGGGTGGACTGTGGATATCAGAACTCGCAAAACTGGTTCGCTTACGGGATCTGGATATAAGTGTTACATTGAACCATTAAATGGATACACATTCTACTCCAAACCTGCGGTATTACGATATCTGGAACCTAAGGACAGTACATGCATTCCGAAGAAGAAGAAAGCGAAATCCCCTGCCACAGGGTCCCCAAGCATCGTTGCGATTGAGAAATCCATTGCAGAGGATCTACCACCTGGGTGGATAAAAGAAGTAACAATTAGAAAAAACCACAACGGCATCAGGAAAGATCCGGTATATAAAGATCCAGTAAGTGGCCATGCTTTCCGTTCCAAGAGGGATGTACAGCGTTATCTTGCATCTGGGTATATTAGGCCTTCTAGAAAAAGAATCCAGGATGGAGACAAGTTAACTCCATCACCTGCTGGTAAAAGACACAAACTGAATGAGTCTGCACCTGAACAACAGCTTTCTGCTGGTGGAGCAACATTTGATAAAAGCAGCTTAGAACTGATAGATGACAACAGCTCAAGAAAAGGACAAGATGTGAACATCCAATCTGGAATGATGATGGTTGCTCCTATTTCTGTTGTAAAGATGCATTCACTAGAGGATAGGGCTGAAGACCTTTCTGAAATTGAGAAAATATCTGATCCAGATGATATGCAAGAGGAGCATGTTGGGAATAGGATGGAGAATGGTAATAAAAAGAATCACAGTAACCCTAGCAGATCCAAAGAGGGGGAGTTCAATGTGCATCGCCAATCTTCACCACAACTCCATAATATGAGAGAGCTGCACAGTCCTTCCCAGGTTTTGAAGCAACTTGGTGGATTTGATGATGACATGAAGATGAATAATTCCATGTCCTGTGAAAAGACCCCCAAACATGGTCGCAAAAGGTCAAAAGTTGAGATCAGTGCAGACTTGCAACAAAGTGAGGGTGTGTCAGCTGCAGAGCTTGCAGATTCTGCACCGCTAAAAAGAGAGTCAGCAAATAAAAAACGGAAATCTTATAAAACCCCACCTATTACAGGTGATCAACTGGAGAAACCGAGAGGTAAAGAAATGTATGATGAGAAATCAGAACCCCAAGTGTCATCGGCATTCAACTACTCTTCGTCTGACCCAAGCTTAGGAAATGCAACTAATAATCTGCAGAGTATGTTACTAGTTGAGAATGGACCTAATACTACTGGAATTGCTACAGTTCTTCAAACTGATATTCAAAAGAAATCGGTTGACAGTGTTACTGGAAGAAGCGAGGATGGATACCCACAGGTACGTTCAAATAAATCCAAAAAGAAGAAAGAGCTTAAAGTGCCTATGCGAGTATCAAAGCGACTTGCTGGCCTTGAACCTGAGGTACAGCCTTCCGGAAGAGCTCTTGAATATGCCACTAGAAAATCAAGAAAAGAACCACCACCTGCAACTGCTACTCAAATTTCAATTGATGGGGCATCTGACCATCTTAACCTTGAGGAAGAAACCAAGCTTACATGTCATGCATCTCATAGTTTGAAAACAGAAGTACTAAGAGAATCATCAAACCAAAGTGAGAAGTCATGCGATGCCCCAACTGTTCCCAAGGAACAATTGCAGAAAGTTATTGAAGCTGAAAATACCAGTGATGAGAGATCAGAGCCACAGCTTCCAGTGCCATTCGGGGGGGACTCTTGGTCAGATCCATGCCTAGAATTTGCATTCAAGACTCTTACTGATGATGTGCTATTTCATCCTGCAACTGACATTTTGCCTGTTATAACTCCCGATCTTAATTACCTACCAAATACGGAATTGCATGGAGTGATGATAACCAGTGAAGAAGCTCATGATAACTCGAACCAACCCCAGAGCAAGAAAGAGCTTAATATGGTTAACCCCTCAGAACCATTCCCAAGGCAACTAGAGATTGCTCCTAAATTTACAACTAGTGAACATTATGGTGATGAAGGCTACACAAGGAATTTAGCTGGAGAATCTTTACATAGTCAAGTTGGAAACGTAATGCCACTCATGCATCATACAGTGATACACCAAGATCCATTGAAGGAAGGTGTACAGGTTCATAAGGGTGAATCCATTATAATGGGGCCACCTCTGGTTGAAACTGGAACTGTAAACCATGATAACTCTAAGTCACAGTTCTGTGCCTCCTTTGCAAATTCTTGGTCTGATCCATGCCTTGAATTTGCATTTAAGACTCTTACAGGTGCGACATCAGCGGACAATAATTTACAGCAACCTCCAAATTTCCATAACCAGATCGATGGTGGCTCATTGTTTCCTGACTTTGGATCTTCCAGCTTTTCTCAGAGCAATTTCTCATTTTACCATGACATAGGAGTGAATTCCATGCCGGGGCAACAATCATCACGTAGCAATCCAATTCCACCCTTAGACAAGGCGAGCCAGCGAGGTTATCCTGAAGTTGATCCGCAAAATCAATATTCTCAGTTCCACAATCATTTTCCAAGGTAA 2607 0.4246 MAEPDSETPEQTNTQISTNAECTPEQQLQIVDKAIDRPEWLPDGWTVDIRTRKTGSLTGSGYKCYIEPLNGYTFYSKPAVLRYLEPKDSTCIPKKKKAKSPATGSPSIVAIEKSIAEDLPPGWIKEVTIRKNHNGIRKDPVYKDPVSGHAFRSKRDVQRYLASGYIRPSRKRIQDGDKLTPSPAGKRHKLNESAPEQQLSAGGATFDKSSLELIDDNSSRKGQDVNIQSGMMMVAPISVVKMHSLEDRAEDLSEIEKISDPDDMQEEHVGNRMENGNKKNHSNPSRSKEGEFNVHRQSSPQLHNMRELHSPSQVLKQLGGFDDDMKMNNSMSCEKTPKHGRKRSKVEISADLQQSEGVSAAELADSAPLKRESANKKRKSYKTPPITGDQLEKPRGKEMYDEKSEPQVSSAFNYSSSDPSLGNATNNLQSMLLVENGPNTTGIATVLQTDIQKKSVDSVTGRSEDGYPQVRSNKSKKKKELKVPMRVSKRLAGLEPEVQPSGRALEYATRKSRKEPPPATATQISIDGASDHLNLEEETKLTCHASHSLKTEVLRESSNQSEKSCDAPTVPKEQLQKVIEAENTSDERSEPQLPVPFGGDSWSDPCLEFAFKTLTDDVLFHPATDILPVITPDLNYLPNTELHGVMITSEEAHDNSNQPQSKKELNMVNPSEPFPRQLEIAPKFTTSEHYGDEGYTRNLAGESLHSQVGNVMPLMHHTVIHQDPLKEGVQVHKGESIIMGPPLVETGTVNHDNSKSQFCASFANSWSDPCLEFAFKTLTGATSADNNLQQPPNFHNQIDGGSLFPDFGSSSFSQSNFSFYHDIGVNSMPGQQSSRSNPIPPLDKASQRGYPEVDPQNQYSQFHNHFPR* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2546 868 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 31 106 IPR001739 GO:0003677
Ahy3g2546 868 MobiDBLite consensus disorder prediction 254 293 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 1 25 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 495 529 - -
Ahy3g2546 868 Gene3D - 117 170 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 580 599 - -
Ahy3g2546 868 CDD MBD 119 161 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 454 483 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 171 204 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 335 349 - -
Ahy3g2546 868 SUPERFAMILY DNA-binding domain 117 164 IPR016177 GO:0003677
Ahy3g2546 868 MobiDBLite consensus disorder prediction 406 420 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 254 420 - -
Ahy3g2546 868 Gene3D - 7 116 - -
Ahy3g2546 868 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 109 183 IPR001739 GO:0003677
Ahy3g2546 868 MobiDBLite consensus disorder prediction 369 383 - -
Ahy3g2546 868 PANTHER OS04G0193200 PROTEIN 3 435 IPR038945 -
Ahy3g2546 868 PANTHER OS04G0193200 PROTEIN 453 861 IPR038945 -
Ahy3g2546 868 Pfam Methyl-CpG binding domain 117 164 IPR001739 GO:0003677
Ahy3g2546 868 Pfam Methyl-CpG binding domain 39 88 IPR001739 GO:0003677
Ahy3g2546 868 PANTHER OS04G0193200 PROTEIN 3 435 - -
Ahy3g2546 868 PANTHER OS04G0193200 PROTEIN 453 861 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 294 311 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 171 193 - -
Ahy3g2546 868 SUPERFAMILY DNA-binding domain 34 90 IPR016177 GO:0003677
Ahy3g2546 868 MobiDBLite consensus disorder prediction 851 868 - -
Ahy3g2546 868 MobiDBLite consensus disorder prediction 828 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2546 Ahy-Chr3 112948902 112954726 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2546 - - adu:107479990 1739.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2884 13 115467529 115473356 Ahy3g2546 3 112948902 112954726 hybridization
Ahy5g1604 5 42101475 42108726 Ahy3g2546 3 112948902 112954726 PCT