Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2080 ATGGTGGAAGAAAACACAACACCAACATCAACAACAAAACATGATTTTTTCGAAACCCAAGCCGTCTTGGACTTGAAGCGTTGGTTCCAAGCAATCATATCCTCACACAAGACCCTCTTTACACTCCTATGGCTGGCGGCGTTCACCTCCGCCTTCCTGTGGCAGAGGGATGCCGTTAGTGGGTTGGTGGTGATGCACGGTGGCGGTGAGTCTCTTAAGAAGAGTGAAAGTTCATTGTTGTATCCTAAGCTGAGGCCCGTGGGCTTCAGCTTAGTGGATTTCGGTGGCGTTGGCGACGGCGTTACCATGAACACTAAGGCGTTTGAGAGGGCGGTTTCAGAGATTTCTAAGTTGGGAGAGAAGGGTGGTGGGCAGCTGAATGTGCCCCCTGGTAGGTGGCTCACTGCACCTTTTAATCTCACCAGTCATATCACTCTTTTTCTTCATCAAGATGCTGTCATTCTTGGAGTTCAGGATGAAAAGTACTGGCCACTGGTGCCTGCATTGCCTTCATATGGATATGGAAGGGAGCATCCTGGCCCTCGTTACACCAGCTTGATCCATGGCCAAAATCTTACTGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTGCAGAAGGTTCTGAACCATACAAGGGGTCCACTGGTTCAGATCTTATGGTCTAGTGACATTCTTATAACTAACATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATACGATTGCAAGAATGTTACAATCAAAAACCTTACAATTTTGGCTCCTGTGTATCGTGCACCAAATACTGATGGCATTGATCCTGATTCATGTGAAGATATGTTGATAGAGAACTGTTACATAAGCGTGGGAGATGATGCAATTGCCATAAAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAAAGAATATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTTAGTGCCGGCATCTCAATAGGCAGCGAAATGTCCGGCGGTGTATCGAACGTGACGGTGGAGAACATCCTTGTATGGAAATCCAGGCGTGCTATTCGGATCAAGACAGCGCCGGGAAGAGGCGGCTTCGTGCGCCAAATATCTTACAAGAATCTGACCTTTGAGAATTGCAGAGTTGGAATTGTCGTCAAAACAGACTACAACCAACACCCTGACGCCGGATACGACCCGAAAGCGCTTCCTCTTCTCGAGGACATAAGCTTCACGGGCGTCCGGGGCCAGGCAGTTCGAGTGCCGGTACGGATTCAAGGCAGCCAGGACATTCCTGTTAGAAATGTGACTTTTAAGGACATGTTTGTCGGATTAATTTCGAAGAGGGTGAAGAAGAAGAAACATATCTTCCAGTGTGCCTTTGTCCGTGGTCAAGTAATAGGGACTATCTTCCCTGCCCCTTGTGAGAACTTTGATCAGTACAATGAACAAGGGCAGCTAGTTAAGCATGCCGTATCATGGAATGTCACAGATATAGATTACCAAATATGA 1536 0.4648 MVEENTTPTSTTKHDFFETQAVLDLKRWFQAIISSHKTLFTLLWLAAFTSAFLWQRDAVSGLVVMHGGGESLKKSESSLLYPKLRPVGFSLVDFGGVGDGVTMNTKAFERAVSEISKLGEKGGGQLNVPPGRWLTAPFNLTSHITLFLHQDAVILGVQDEKYWPLVPALPSYGYGREHPGPRYTSLIHGQNLTDVVITGHNGTINGQGQTWWTKYLQKVLNHTRGPLVQILWSSDILITNITLRDSPFWTLHPYDCKNVTIKNLTILAPVYRAPNTDGIDPDSCEDMLIENCYISVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWKSRRAIRIKTAPGRGGFVRQISYKNLTFENCRVGIVVKTDYNQHPDAGYDPKALPLLEDISFTGVRGQAVRVPVRIQGSQDIPVRNVTFKDMFVGLISKRVKKKKHIFQCAFVRGQVIGTIFPAPCENFDQYNEQGQLVKHAVSWNVTDIDYQI* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2080 511 SUPERFAMILY Pectin lyase-like 80 484 IPR011050 -
Ahy3g2080 511 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 29 509 - -
Ahy3g2080 511 Pfam Glycosyl hydrolases family 28 184 453 IPR000743 GO:0004650|GO:0005975
Ahy3g2080 511 PANTHER PECTIN LYASE-RELATED 29 509 - -
Ahy3g2080 511 Gene3D - 70 470 IPR012334 -
Ahy3g2080 511 SMART pbh1 346 367 IPR006626 -
Ahy3g2080 511 SMART pbh1 284 305 IPR006626 -
Ahy3g2080 511 SMART pbh1 375 396 IPR006626 -
Ahy3g2080 511 SMART pbh1 256 283 IPR006626 -
Ahy3g2080 511 SMART pbh1 318 340 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2080 Ahy-Chr3 50579825 50584494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2080 30 511 Glycoside Hydrolase AT3G42950 70.287 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2080 - - adu:107479176 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2370 13 52113378 52117812 Ahy3g2080 3 50579825 50584494 hybridization
Ahy1g1761 1 93893357 93897740 Ahy3g2080 3 50579825 50584494 PCT
Ahy3g2080 3 50579825 50584494 Ahy1g1761 1 93893357 93897740 PCT