Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1761 ATGATGGTGGACACCTCAACGCTTGGGCGCTTCCACCACCAAAGACTCGAATTCAAGCGCTGTCTCCCCGCAATCATAACCTCCCACAGAACCCTCTTCACCGTCCTCTGGATCGCCGCCTTCGCCTCCGTCTTCATCTGGCAGAGGAACGTTGTTGTCGGAGGCTTCTTCCTCTTCGGTCGGACCCTCCCGCCGCGCCCGATTCCCAAGCTGAGGCCGGTGGCTTTCAACTTGACGGATTTCGGGGGTGTTGGCGACGGTGTCACCCTCAACACTGAGGCATTTGAGAGGGCCGTTTCTGCGATTTCCAAGTTGGGGAAGAAAGGTGGTGGCCAGCTCAATGTGCCTCCCGGTCGCTGGCTTACTGCGCCCTTCAATCTCACCAGCCATATGACACTTTTTGTAGCTCAAGATGCTGTTATTCTTGGACTTGATGATGAGAAGTATTGGCCACTGATGCCACCATTGCCATCGTATGGGTATGGGAGGGAGCATCCTGGACCACGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAACCTGGTGGAAAAAGTATCGTCAAAAACGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTCATTGCTGATATTACTTTACGCGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATATCACTATAAGAAATGTTACAATATTGGCTCCTGTAACTGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTACAGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCATCCATGAATATAATGATCCGGAATCTAGTTGTCCGCTCCGTGGTCAGTGCTGGCGTTTCAATAGGCAGTGAGATGTCTGGTGGGGTGTCCAATGTGACTGTGGAGAATCTTCTTGTATGGGGTTCTAGGCGTGCCGTGAGGATTAAAACGGCCCCTGGGCGAGGCGGATTTGTTCGCCATATTACTTACCGGAATCTAACATTTGATAACGTCCGTGTTGGAATAGTAATTAAGACAGATTACAACGAGCACCCTGATGATGGATATGACCCTAGTGCACTTCCTGTACTCAGAGACATAAGTTTCACCACCGTCCATGGCCAGGGTGTTCGTGTGCCAGTACGAATTCATGGCAGCGAAGAGATCCCAGTGAGAAATGTGACGTTTCGGGACATGTCAGTTGGCCTCACTTACAAGAAGAAACATATCTTTCAGTGTGCCTTTGTCCAAGGGCGCGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCATGGACAGCTAGTTAAGCATTCTGCTTCCCAGAATGTAACAGACATAGATTATGATTTTTGA 1485 0.4822 MMVDTSTLGRFHHQRLEFKRCLPAIITSHRTLFTVLWIAAFASVFIWQRNVVVGGFFLFGRTLPPRPIPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVSAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFVAQDAVILGLDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMWSSDIVIADITLRDSPFWTLHPYDCKNITIRNVTILAPVTEAPNTDGIDPDSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSVVSAGVSIGSEMSGGVSNVTVENLLVWGSRRAVRIKTAPGRGGFVRHITYRNLTFDNVRVGIVIKTDYNEHPDDGYDPSALPVLRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYNEHGQLVKHSASQNVTDIDYDF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1761 494 PANTHER PECTIN LYASE-RELATED 22 492 - -
Ahy1g1761 494 PANTHER POLYGALACTURONASE-RELATED 22 492 - -
Ahy1g1761 494 Pfam Glycosyl hydrolases family 28 171 453 IPR000743 GO:0004650|GO:0005975
Ahy1g1761 494 Gene3D - 64 456 IPR012334 -
Ahy1g1761 494 SUPERFAMILY Pectin lyase-like 68 467 IPR011050 -
Ahy1g1761 494 SMART pbh1 423 444 IPR006626 -
Ahy1g1761 494 SMART pbh1 243 270 IPR006626 -
Ahy1g1761 494 SMART pbh1 362 383 IPR006626 -
Ahy1g1761 494 SMART pbh1 305 327 IPR006626 -
Ahy1g1761 494 SMART pbh1 333 354 IPR006626 -
Ahy1g1761 494 SMART pbh1 271 292 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1761 Ahy-Chr1 93893357 93897740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1761 10 493 Glycoside Hydrolase AT1G19170 77.778 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1761 - - rcu:8259080 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy1g1761 1 93893357 93897740 Ahy13g2370 13 52113378 52117812 PCT
Ahy1g1761 1 93893357 93897740 Ahy3g2080 3 50579825 50584494 PCT
Ahy13g2370 13 52113378 52117812 Ahy1g1761 1 93893357 93897740 PCT
Ahy3g2080 3 50579825 50584494 Ahy1g1761 1 93893357 93897740 PCT