Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2038 ATGGCATCGGTGTACATCCCGGTGCAGAACTCGGAGGAAGAGGTTAGGGTTGCACTCGACCAGCTTCCCAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCCGAGCAAGCCCCTCTCGATCTCTGGCTCATTATCGCGAGGGAGTATTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAGGGATCCAGCCCGGAAATCGATGACTATTATGCTGACGTTAGATATGAGAGGATTGCTATATTAAATGCCCTTGGGGCATACTATAGCTACCTTGGGAAAATTGAGACTAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACTCAATATTACAATAAAGCATCGAGGATCGACATGCATGAGCCCTCGACATGGGTTGGGAAAGGTCAACTTTTGCTTGCAAAGGGAGAAGTAGAGCAGGCATCTGCTGCATTTAAGATTGTATTAGATGGAGACCGAGATAATGTTCCTGCTCTTCTCGGCCAGGCCTGTGTTGAGTTCAACCGAGGGCGGTATTCTGACTCACTTGAGTTGTACAAGAGAGCATTGCAAGTTTATCCCGATTGCCCTGCACCTGTTAGGCTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCGACAGGCATTTGAGCGAGTTTTGCAGCTAGATCCAGAAAATGTTGAGGCTCTTGTAGCACTTGCAATAATGGACTTGCGTACCAATGAAGCTGCTGGAATTAGAAAGGGAATGGTAAAGATGCAGAGGGCATTTGAGATATACCCTTATTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTTTTCTTCACTGGTCAACATTTCTTGGTTGAGCAACTGACTGAAACTGCATTAGCTGTCACCAATCATGGTCCAACAAAGTCCCATTCTTATTATAATTTAGCGCGCTCTTACCATAGCAAGGGGGACTATGACAAAGCAGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCTCATGAATTTGTGTTTCCTTATTATGGTCTAGGACAAGTGCAATTAAAGTTGGGAGATTTCAGAAGTGCCCTGTCAAATTTTGAAAAGGTTCTGGAGGTGTACCCGGATAATTGCGAGACATTAAAAGCACTGGCACACATATATGTTCAGCTTGGTCAAACTGACAAGGGCCAGGACTTTATTCGAAAAGCAACCAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAACTGGGTGAATTGTTGATTCTGTCTGATACAGGATCTGCCCTCGATGCATTTAAAACTGCTCGTACTCTTTTTAAGAAGGGAGGCCAAGACGTACCAATAGAATTACTCAATAATATTGGTGTCCTTCAGTTTGAAAGGGGAGAGTTTGAGCTTGCTCAACAAACTTTTAAAGAGGCTTTGGGTGACGGCATATGGCTTTTTCTTATTAATGGGGGAAATAAGTCTTCCAATGATATTGCTACTTCTACACTACAGTTTAAGGACATGCAATTATTTCATAAGCTTGAAAGTACCGGTCATCATATAGATTTGCCCTGGGATAAAGTCACAGTGCTCTTTAACCTGGCCAGATTACTTGAGCAGTTAAATGATTCTGGAACTGCAAGTATATTGTATCGCCTAATATTATTCAGGTTTCCAGACTATATTGATGCGTATCTGAGGTTAGCTGCAATCGCAAAGGCTCGAAACAACATTCTGTTAAGCATTGAGCTGGTTCATGATGCGCTAAAGGTGAATGAAAAGTGTCCAAATGCATTATCTATGCTTGGTGATTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACTCTCCGGGCAGCCAGTGATGCAACTGATGGGAAGGACTCATATGCTACTCTTGCTCTTGGAAACTGGAATTACTTTGCAGCCGTTCGGAATGAGAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAACTCTATACACGAGTTCTGATTCAGCATTCTGCAAATTTATATGCTGCCAATGGTGCTGGAGTAGTGCTAGCTGAGAAAGGCCATTTTGATGTTTCAAAGGATATCTTCACTCAGGTTCAAGAAGCTGCAAGTGGTAGTGTTTTTGTCCAGATGCCCGATGTTTGGATAAATTTGGCCCATGTTTATTTTGCTCAGGGAAATTTTTCTTTGGCTGTGAAAATGTATCAGAATTGCTTGCGAAAGTTTTTTTATAACACAGACTCACAAATACTTCTATATTTAGCTCGTACTCATTATGAAGCAGAACAGTGGCAAGATTGTATAAAAACTCTACTAAGGGCAATCCATTTGGCACCCTCAAACTATACATTAAGATTTGACGCAGGTGTTGCGATGCAAAAGTTTTCAGCATCAACATTACAGAAGGCAAAAAGGACTGCAGATGAGGTGAGAGCAACTGTAGCAGAACTGCAAAATGCTGTTCGAGTATTTAGTCAGTTGTCTGCTGCATCCAACCTTCATATTCATGGGTTTGATGAGAAAAAAATTGACACTCATGTTGGGTACTGCAACCACCTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAGCAGCAAGTGCGACAGAGGCAAGAACTTGCTCGTCAGGTTGCATTGGCCGAGGAAGCCCGACGGAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAGCAAGAGGATGAACTGAAGAGGGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGAACAATGGAAGAGCAGCTCACACTCAAGACGAAGGGAAAGGACACCAGAAGAAGAAGAGGGTGGGACTGGCGAGAAACGGAGAAAGAAAGGTGGAAAGAGGAGAAAGAAGGATAAGCACTCGAAATCACACTATGACAATGAAGAAGGAGAAGCCGATATGATGAATGAACCAGAGATGGAGGATGAAGATGTTGATAACTACATAGAGCCCCAAACTATGGGGAATGATGATGCTGAAGGGAATGCTCAGGATCTTCTTGCAGCAGCTGGACTTGAAGATTCTGATGCAGAAGATGATATGGCTGCACCATCGTCAAACATTGCCCGCCGGAGGCAAGCGTTATCAGAATCTGATGATGATGAACCAATAATGCGGCAATCAAGTCCTATAAGAGAAAATTCTGCTGATATGGAGCTGAGTGATGGAGAAATTAGGGAGCCTAAGACAAATGGAGATGATGGTAGTGACTAG 3243 0.432 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPDCPAPVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVALAIMDLRTNEAAGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQLKLGDFRSALSNFEKVLEVYPDNCETLKALAHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGSALDAFKTARTLFKKGGQDVPIELLNNIGVLQFERGEFELAQQTFKEALGDGIWLFLINGGNKSSNDIATSTLQFKDMQLFHKLESTGHHIDLPWDKVTVLFNLARLLEQLNDSGTASILYRLILFRFPDYIDAYLRLAAIAKARNNILLSIELVHDALKVNEKCPNALSMLGDLELKNDDWVKAKETLRAASDATDGKDSYATLALGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFKRVKEQWKSSSHSRRRERTPEEEEGGTGEKRRKKGGKRRKKDKHSKSHYDNEEGEADMMNEPEMEDEDVDNYIEPQTMGNDDAEGNAQDLLAAAGLEDSDAEDDMAAPSSNIARRRQALSESDDDEPIMRQSSPIRENSADMELSDGEIREPKTNGDDGSD* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2038 1080 Coils Coil 801 821 - -
Ahy3g2038 1080 MobiDBLite consensus disorder prediction 895 1080 - -
Ahy3g2038 1080 Pfam Tetratricopeptide repeat 353 412 - -
Ahy3g2038 1080 Pfam Tetratricopeptide repeat 714 740 IPR019734 GO:0005515
Ahy3g2038 1080 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Ahy3g2038 1080 SUPERFAMILY TPR-like 514 793 IPR011990 GO:0005515
Ahy3g2038 1080 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Ahy3g2038 1080 Coils Coil 855 922 - -
Ahy3g2038 1080 SUPERFAMILY HCP-like 203 435 - -
Ahy3g2038 1080 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Ahy3g2038 1080 MobiDBLite consensus disorder prediction 1036 1050 - -
Ahy3g2038 1080 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Ahy3g2038 1080 MobiDBLite consensus disorder prediction 1060 1080 - -
Ahy3g2038 1080 MobiDBLite consensus disorder prediction 895 950 - -
Ahy3g2038 1080 Pfam Tetratricopeptide repeat 168 228 - -
Ahy3g2038 1080 Gene3D Tetratricopeptide repeat domain 336 478 IPR011990 GO:0005515
Ahy3g2038 1080 Gene3D Tetratricopeptide repeat domain 7 335 IPR011990 GO:0005515
Ahy3g2038 1080 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Ahy3g2038 1080 Gene3D Tetratricopeptide repeat domain 516 648 IPR011990 GO:0005515
Ahy3g2038 1080 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Ahy3g2038 1080 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Ahy3g2038 1080 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1043 IPR031101 GO:0006355|GO:0016570
Ahy3g2038 1080 MobiDBLite consensus disorder prediction 975 991 - -
Ahy3g2038 1080 SUPERFAMILY TPR-like 115 246 IPR011990 GO:0005515
Ahy3g2038 1080 SMART tpr_5 592 625 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 558 591 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 749 782 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 162 195 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 713 746 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 128 161 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 342 375 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 448 477 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 376 409 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 524 557 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 197 230 IPR019734 GO:0005515
Ahy3g2038 1080 SMART tpr_5 305 338 IPR019734 GO:0005515
Ahy3g2038 1080 Gene3D Tetratricopeptide repeat domain 650 837 IPR011990 GO:0005515
Ahy3g2038 1080 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2038 Ahy-Chr3 46602827 46616367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2038 K15176 - gmx:100794371 1900.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2325 13 49903242 49917812 Ahy3g2038 3 46602827 46616367 hybridization