Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1853 ATGATCAAGGGGAAGGACATATACAATGTTATTGCAGGCATTGTGCCCTTGTACGTGGCCATGTTCTTAGGTTATGGCTCAGTTCGGTGGTGGAAGATCTTAACGCCGGAGCAATGCTCCGGCGTCAACCGTTTCGTGTCGATGTTCGCGGCCCCTTTCCTGGCATTTAAGTTCATATCGGCCAACAACCCTTACAAGATGAACTTCAAGTTCTTGGCGGGAGACTCGTTACAAAAGGTTTTCGTTATGGTTGTGCTTTATATATGGAATCTAACGAGATTCGGGAATATGGACACAGGCATAATTATCTATGCCCTTTTTGCTTTGCCTAATACCCTAGTCATGGGTATTCCCTTAATGGAAGCAATGTACGGAAAATTCTCTACACCTCTCATTACTCAAATTGTTGTCTTGCAAAGCGTCATATGGAACACCGTCTTGTTGATTCTGTTCGAGTATAGGGCGGCTAAAATCCTCATCCAAGAGCAATTCCCCGACAACACGGCCGCTATTGCCACAGTGACAATAGATCCGGACGTGGAGTCCCTAGGCGGGGAGCCCCTGCAAGCTGACACGGACGTGGGACATGAGGGGAAGCTTCATGTGGTGGTGAGAAGATCAGCATCCGTATCATCTAATAATACATCTTACAAGTCTTTTGAATTGCCTTCCTCAGGCTTATCTAGGGCTTCTTCAAGTGTTAGTGAAATCCATTCTATTTACTCCGCTAGAGAAACCCCGTTAAGATATCCAAGCTTTGAGAGTCCTCATATTATTAATTTGCCAAAAAGCATGTCCGTTGGTACTATTTTGGAAGAGGATTTGAAGAGGCCAAAGAAATTCTGGGGTGGAAGTCGCAAAAATAATAGTAGAGTTTCCTCTATTTGTACCAATGACGACAGTATTGGATCTTCTAACGGTGTTGTTGTTCTTCCACACCACAGTGCTGCCTCCAGAGATGAGCATGATGAATTGACTGAAACTAAAGAAAATTCGAGAAGTTCTTTAAGTGGGAGCTGGAAGAAGATGGAGAATATTGAAGAAAATGTTGAAAACAAAAAGAAACAAATGCCATCTGCGAGGGTCATGACGAAGCTCATTACAGTAATGGCTTATAGGAAGCTCTCATGGAACCCTAATACATGGGCAAGTGTTGTTGGCATCACGTGGTCCCTCATAGCATACAGGTGTCACATCAAAATGCCGTCCATAATTGAAGGTTCCATTACAATAGTGTCAAATACCGGTTTGGGTATGGCTATGTTTAGTCTAGGTCTATTCATGGCATTACAACCAAAGATCATTGCTTGTGGAAAAAAGTGGGCAGCAATTTCTATGGGTGTTAGGTTCTTGGCTGGTCCGGCACTGATTGCTGCAACCTCAGCACCAATTGGTATCCGTGGAGATCTTTTACGAGTTGAAATTATTCAGGCTGCTCTACCCCAAGGTATCATTCCCTTTATATTTGCTAAAGAATACAATCTTTATCCAGATATCTTCAGTACTGCGGTCATCTTCGGAATGGTGGTTGCATTGCCCGTAACAATAATATACTACGTGCTTCTTGGGCTTTAA 1575 0.4337 MIKGKDIYNVIAGIVPLYVAMFLGYGSVRWWKILTPEQCSGVNRFVSMFAAPFLAFKFISANNPYKMNFKFLAGDSLQKVFVMVVLYIWNLTRFGNMDTGIIIYALFALPNTLVMGIPLMEAMYGKFSTPLITQIVVLQSVIWNTVLLILFEYRAAKILIQEQFPDNTAAIATVTIDPDVESLGGEPLQADTDVGHEGKLHVVVRRSASVSSNNTSYKSFELPSSGLSRASSSVSEIHSIYSARETPLRYPSFESPHIINLPKSMSVGTILEEDLKRPKKFWGGSRKNNSRVSSICTNDDSIGSSNGVVVLPHHSAASRDEHDELTETKENSRSSLSGSWKKMENIEENVENKKKQMPSARVMTKLITVMAYRKLSWNPNTWASVVGITWSLIAYRCHIKMPSIIEGSITIVSNTGLGMAMFSLGLFMALQPKIIACGKKWAAISMGVRFLAGPALIAATSAPIGIRGDLLRVEIIQAALPQGIIPFIFAKEYNLYPDIFSTAVIFGMVVALPVTIIYYVLLGL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1853 524 Coils Coil 343 363 - -
Ahy3g1853 524 MobiDBLite consensus disorder prediction 315 330 - -
Ahy3g1853 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 315 524 - -
Ahy3g1853 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 269 - -
Ahy3g1853 524 TIGRFAM 2a69: auxin efflux carrier 1 524 IPR014024 -
Ahy3g1853 524 Pfam Membrane transport protein 10 519 IPR004776 GO:0016021|GO:0055085
Ahy3g1853 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 315 524 IPR033526 GO:0010315|GO:0010329
Ahy3g1853 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 269 IPR033526 GO:0010315|GO:0010329
Ahy3g1853 524 MobiDBLite consensus disorder prediction 315 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1853 Ahy-Chr3 38994339 38998376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1853 282 515 Organic Solute Cotransporters AT1G73590 47.280 1.73e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1853 K13947 - gmx:100788935 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2155 13 41032497 41036263 Ahy3g1853 3 38994339 38998376 hybridization
Ahy11g3093 11 148581441 148584696 Ahy3g1853 3 38994339 38998376 PCT
Ahy1g1877 1 95315902 95318617 Ahy3g1853 3 38994339 38998376 PCT
Ahy3g1853 3 38994339 38998376 Ahy11g3093 11 148581441 148584696 PCT
Ahy3g1853 3 38994339 38998376 Ahy1g1877 1 95315902 95318617 PCT