Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0508 ATGTTGCATAGACGCACATTCTCGTTCTTGTTCTTCATTACGACTACTCTTGTCCTCATGACATTCACATCATCACATTCACTTGCGCATTCTATTGCCATCTCATCAAGATCAATGGCAGACATGGAAAGGTTCAGCAATGCTGGGAGAGGCAGCAACATCACCGGAATATCAGAGTTCAAGAGATATCTATGGCGTTTCGGGTACCTCGACCATAATGTTAATACCACATGTAATTGTTTCAGCGAAGAGTTTGACGCCATGTTAGAATCTGCTCTCGTTAGATACCAACGCAAGCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCATCACCATTTCTGAGATGATCACACCGAGATGCGGAGTTCCAGACAGTAATGATCACACTCACACACACACTCACATGCACTCCGCAAAGAACTTCGTGTATTTTCCGGGGAAGCCACGGTGGTCGGGTCCAATGCCGACGACACTCACCTACGCTTTCTCCCCGGAATACACCATCCACACCTTGACCCTTCGCCAGATCCGGAGAGCGTTCCGACGCGCCTTCACGCGCTGGTCTAACGTCATTCCTCTCACATTTGTGGAATCAGACGACTACAGTTTTGCTGAGATCAAGATAGGGTTTTACAGCGGCGACCACGGCGATGGCGAGGCTTTCGACGGGGTTCTTGGAGTGCTGGCGCATTCATTCTCGCCGGAGAGCGGGCGGCTACACCTGGATGCGGCGGAGACGTGGGCAGTGGACTTCGGGGAGAGTTGGTCGGAGGTAGCGGTGGATTTGGAGTCCGTGGCAACGCACGAGATTGGACACGTGCTTGGTCTGTCTCACAGTTCGGTTAGAGAGGCAGTTATGTATCCCAGCTTGAGGCCGAGAGAGAAGAGATATCGTCTCCATATTGATGACGTCATGGGAGTCCAATCTCTTTATGGCTCCAACCCTCATTTCAGATCTTCTGATATCTCGTCGCTTCAATCTGCTATCTCCGCAAATCATGCTCCTCCTCGCTTTCCACCATTCAGTATTCTTCTCTCTTGTGCATACCTTTTGTCTTTCTTTATAATTTTTTCCAGGTAA 1083 0.4977 MLHRRTFSFLFFITTTLVLMTFTSSHSLAHSIAISSRSMADMERFSNAGRGSNITGISEFKRYLWRFGYLDHNVNTTCNCFSEEFDAMLESALVRYQRKLGLQVTGKLDSITISEMITPRCGVPDSNDHTHTHTHMHSAKNFVYFPGKPRWSGPMPTTLTYAFSPEYTIHTLTLRQIRRAFRRAFTRWSNVIPLTFVESDDYSFAEIKIGFYSGDHGDGEAFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGESWSEVAVDLESVATHEIGHVLGLSHSSVREAVMYPSLRPREKRYRLHIDDVMGVQSLYGSNPHFRSSDISSLQSAISANHAPPRFPPFSILLSCAYLLSFFIIFSR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0508 360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 143 315 - -
Ahy2g0508 360 PANTHER METALLOENDOPROTEINASE 4-MMP 28 338 - -
Ahy2g0508 360 SMART col_5 147 314 IPR006026 GO:0006508|GO:0008237|GO:0008270
Ahy2g0508 360 PANTHER MATRIX METALLOPROTEINASE 28 338 - -
Ahy2g0508 360 Pfam Matrixin 156 313 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ahy2g0508 360 CDD ZnMc_MMP 150 313 IPR033739 GO:0008237|GO:0008270
Ahy2g0508 360 ProSitePatterns Matrixins cysteine switch. 119 126 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ahy2g0508 360 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy2g0508 360 PRINTS Matrixin signature 181 196 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy2g0508 360 PRINTS Matrixin signature 205 233 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy2g0508 360 PRINTS Matrixin signature 300 313 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy2g0508 360 PRINTS Matrixin signature 266 291 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy2g0508 360 Pfam Putative peptidoglycan binding domain 57 114 IPR002477 -
Ahy2g0508 360 Gene3D Collagenase (Catalytic Domain) 46 318 IPR024079 GO:0008237
Ahy2g0508 360 SUPERFAMILY PGBD-like 49 125 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0508 Ahy-Chr2 7229263 7230619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0508 - K07999 gmx:100781237 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0605 12 9744609 9745958 Ahy2g0508 2 7229263 7230619 hybridization