Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0605 ATGTTGCATAGACGCACATTCTCGTTCTTCTTCTTCATTACGACTACTCTTGTCCTCATGACATTCACATCATCATATTCACATGCGCATTCCATTGCCATCTCATCAAGATCAATGGCAGACATGGAAAGGTTCAGCAATGCTGGGAGAGGCAGCAACATCACCGGAATATCAGAGTTCAAGAGATATCTATGGCGTTTTGGGTACCTCAACCATAATATTAATACCACATGTACTTGTTTCAGCGACGAGTTTGACGCCATGTTAGAATCTGCTCTCGTTAGATACCAACGCAAGCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCATCACCATTTCTCAGATGATCACACCGAGATGCGGAGTTCCAGACAGTAATGATCACACTCACACTCACATGCACTCCACAAAGAACTTTGTGTATTTTCCGGGGAAGCCACGGTGGTCGGGTCCAATGCCGACGACACTCACCTACGCTTTCTCCCCGGAATACACCATCCACACCTTGACCCTTCGCCAGATCCGGAGAGCCTTCCGACGCGCCTTCACGCGCTGGTCTAACGTCATTCCTCTCACATTTGTGGAATCAGACGACTACGGTTTTGCTGAGATCAAGATAGGGTTTTACAGCGGCGACCACGGCGATGGCGAGGCTTTCGACGGGGTTCTTGGAGTGCTGGCGCATTCATTCTCGCCGGAGAGCGGGCGGCTACACCTGGATGCGGCTGAGACGTGGGCGGTGGACTTCGGGGAGAGTTGGTCGGAGGTAGCGGTGGATTTGGAGTCCGTGGCAACGCACGAGATTGGACACGTGCTTGGTCTGTCACACAGTTCGGTTAGAGAGGCAGTTATGTATCCCAGCTTGAGGCCGAGAGAGAAGAGATATCGTCTCCACATTGATGACGTCATGGGAGTCCAATCTCTTTATGGCTCCAACCCTCATTTCAGATCATCTGATGTCTCGTCGCTTCAATCTGCTATCTCCGCAAATCAAGCTCCTCCTCGCTTTCCACCATTCAATATTCTTCTCTCTTGTGCATACCTTTTCTCTTTCTTTATAATTTTTTGCAGGTAA 1077 0.4968 MLHRRTFSFFFFITTTLVLMTFTSSYSHAHSIAISSRSMADMERFSNAGRGSNITGISEFKRYLWRFGYLNHNINTTCTCFSDEFDAMLESALVRYQRKLGLQVTGKLDSITISQMITPRCGVPDSNDHTHTHMHSTKNFVYFPGKPRWSGPMPTTLTYAFSPEYTIHTLTLRQIRRAFRRAFTRWSNVIPLTFVESDDYGFAEIKIGFYSGDHGDGEAFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGESWSEVAVDLESVATHEIGHVLGLSHSSVREAVMYPSLRPREKRYRLHIDDVMGVQSLYGSNPHFRSSDVSSLQSAISANQAPPRFPPFNILLSCAYLFSFFIIFCR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0605 358 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy12g0605 358 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy12g0605 358 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy12g0605 358 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy12g0605 358 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Ahy12g0605 358 SUPERFAMILY PGBD-like 49 125 IPR036365 -
Ahy12g0605 358 Gene3D Collagenase (Catalytic Domain) 48 316 IPR024079 GO:0008237
Ahy12g0605 358 Pfam Matrixin 154 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ahy12g0605 358 Pfam Putative peptidoglycan binding domain 57 116 IPR002477 -
Ahy12g0605 358 PANTHER MATRIX METALLOPROTEINASE 25 336 - -
Ahy12g0605 358 ProSitePatterns Matrixins cysteine switch. 119 126 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Ahy12g0605 358 SMART col_5 145 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Ahy12g0605 358 CDD ZnMc_MMP 148 311 IPR033739 GO:0008237|GO:0008270
Ahy12g0605 358 PANTHER METALLOENDOPROTEINASE 4-MMP 25 336 - -
Ahy12g0605 358 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 141 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0605 Ahy-Chr12 9744609 9745958 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0605 - K07999 gmx:100781237 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0605 12 9744609 9745958 Ahy2g0508 2 7229263 7230619 hybridization