Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3052 ATGGGGAGGAAATGGTTTGAGAGATGGGTTATGGTAGAAGCAGTTGTTGAAGTGATTAGTATAATTATTATGATGAGTTGGTGTGTGGAAGGGGTTGGAGTGAATTGGGGAACACAAGCTACACAGCAATTGAGAGCAGACACAGTGGTGCAGATGATGAAGGACAATGGAATAGAGAAAGTGAAACTGTTTGATGCAGATGGAAGAATCATGAGTGCACTTGCTGGGTCTGGGATTGAAGTTATGGTTGCCATTCCCAATGACCAGCTTGCTGCCATGACTAGCTATGATCGAGCTGTTCAGTGGGTCAGAAAGAATGTTACCAGTTACAACTTCAAGGGTGGAGTTAACATCAAATATGTAGCAGTTGGGAACGAACCATTCTTGAAATCATACAACAATTCATTCTTGAATGTGACATTGCCTGCCCTACAGAACATACAAAATGCCCTTAATGAAGCTGGGATGGGGGAGAAGATAAAGGCCACAGTGCCCTTAAATGCTGACGTGTACCAATCCCCACAGAACAACCCTGTTCCATCGGCAGGAACTTTTAGGCCTGACATATCAGATCTCATGACACAAATAGTGCAATTCTTGCACAACAACAATGCACCATTCACCGTTAACATCTACCCATTCTTGAGTCTCTATGGCAATGATGATTTCCCTTTTGACTATGCCTTCTTTGATGGGGTATCAAACCCCATAAACGACAATGGGGTTCTTTACACCAATGTCTTTGATGCAAATTTTGACACCTTGGTTTCTGCTCTCAAAGGGGTTGGGTATGGTGACGTGGCAATCTTGGTTGGAGAAGTAGGGTGGCCCACAGATGGAGACAAGAATGCCAACGTGGCCAATGCTGTAAGGTTCTATAATGGACTTCTTCCAAGGATTTCATCAAGTAAAGGTACACCTCTAAGACCAGGGCACCTTCAAGTTTATCTCTTTGGCCTTATTGATGAGGATGCTAAGAGCATTGCTCCTGGCAACTTTGAGCGTCATTGGGGAATATTCCGGTACGATGGACAACCTAAGTTCCCAATGGATCTTTCTGGTCAAGGTCAAAACAAAATATTAGTGGGTGCTAAGAATGTGATATACTTGGACCCAAAATGGTGCATGTTCAATCCAGATGCCACGGATCTTAGCAAACTAGCTGATAATATAAACTATGCTTGCACATTTGCGGATTGCACTGCATTGGGATATGGTTCTTCATGCAACAATCTTGATGCTAATGGGAATGCCTCATATGCATTTAATATGTACTACCAAGCGCAAAATCAGAACGACATGGCTTGCAATTTTGAAGGCTTAGCCCAAATTACTATGAAGAATATTTCTACTCCCACTTGCGACTTTATTATTCAGATAAACCCTTCATCATCTTCTTCTTTGACACCCTCATCAGCAGTAGCTTTCTTATTTATTGCATTAGCCATGATTCTATTTTTTTAG 1464 0.4214 MGRKWFERWVMVEAVVEVISIIIMMSWCVEGVGVNWGTQATQQLRADTVVQMMKDNGIEKVKLFDADGRIMSALAGSGIEVMVAIPNDQLAAMTSYDRAVQWVRKNVTSYNFKGGVNIKYVAVGNEPFLKSYNNSFLNVTLPALQNIQNALNEAGMGEKIKATVPLNADVYQSPQNNPVPSAGTFRPDISDLMTQIVQFLHNNNAPFTVNIYPFLSLYGNDDFPFDYAFFDGVSNPINDNGVLYTNVFDANFDTLVSALKGVGYGDVAILVGEVGWPTDGDKNANVANAVRFYNGLLPRISSSKGTPLRPGHLQVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQGQNKILVGAKNVIYLDPKWCMFNPDATDLSKLADNINYACTFADCTALGYGSSCNNLDANGNASYAFNMYYQAQNQNDMACNFEGLAQITMKNISTPTCDFIIQINPSSSSSLTPSSAVAFLFIALAMILFF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3052 487 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 472 IPR044965 GO:0004553|GO:0005975
Ahy20g3052 487 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Ahy20g3052 487 Pfam X8 domain 373 442 IPR012946 -
Ahy20g3052 487 Pfam Glycosyl hydrolases family 17 32 351 IPR000490 GO:0004553|GO:0005975
Ahy20g3052 487 SUPERFAMILY (Trans)glycosidases 32 351 IPR017853 -
Ahy20g3052 487 Gene3D - 370 467 - -
Ahy20g3052 487 SMART X8_cls 373 456 IPR012946 -
Ahy20g3052 487 Gene3D Glycosidases 30 359 - -
Ahy20g3052 487 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 15 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3052 Ahy-Chr20 141199336 141201914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3052 11 460 Miscellaneous Gene Families AT1G64760 72.444 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3052 - - gmx:102666963 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3052 20 141199336 141201914 Ahy10g2489 10 114410619 114413538 hybridization
Ahy16g2277 16 125888663 125892348 Ahy20g3052 20 141199336 141201914 PCT
Ahy6g1946 6 94918860 94922634 Ahy20g3052 20 141199336 141201914 PCT
Ahy20g3052 20 141199336 141201914 Ahy16g2277 16 125888663 125892348 PCT
Ahy20g3052 20 141199336 141201914 Ahy6g1946 6 94918860 94922634 PCT