Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3046 ATGAATGCATTAGCAGCCACAAACAGGAACTTTAGGTTGGCTTCTAAGCTTCTTGGAATAGATTCAAAGCTTGCCAAGAGTTTGCTGATTCCATTCAGGGAAGTGAAGGTTGAGTGTACAATACCAAAAGACGATGGAAGCTTAGCAACTTACGTTGGATTCAGAATTCAACATGATAATTCTAGAGGACCAATGAAAGGAGGGATTCGATACCATCCACAGGTTGAAACGGACGAAGTGAATGCTTTGGCGCAACTAATGACGTGGAAGGCAGCAGTAGCAAACATACCATATGGTGGTGCGAAAGGAGGCATAGGTTGTGATCCTTCAGAATTAACTGTTTCTGAGTTGGAAAGACTTACCCGAGTTTTCACTCAGAAAATTCATGATCTCATTGGAATTCAGATTGATGTTCCAGCACCTGACATGGGAACTGGACCCCAGACTATGGCCTGGATCCTAGATGAGTATTCCAAATTTCATGGCCACTCACCTGCAATTGTCACCGGCAAACCTATTGATCTTGGTGGATCTCTGGGGAGAGATGCAGCTACAGGGCGAGGAGTGCTGTTTGCAACTGAGGCTTTGCTTAATCAGCATGGAAAGACAATATCAGGCCAACGCTTTGTCATACAGGGATTTGGGAATGTGGGGTCTTGGGCTGCCAAATTAATAAGCGAAAAAGGTGGAAAAGTGGTAGCAGTGAGTGACATAACCGGAGGAATCAAGAACAGTGAAGGTTTGAACATCCCAAGCCTACTAAAACATTCTAAAGAACACAGAGGAGTAAGAGGATTTCAAGGTGGAGATCCTATTGATCCCAATTCAATATTGCTTCAAGATTGTGATGTTCTCATTCCTGCAGCTCTTGGTGGTGTCATCAATAGGGAAAATGCAAATGAGATCAAAGCCAAATTCGTTGTTGAAGCAGCCAATCATCCAACTGACCCAGAGGCTGATGAGATTCTCAAAAAGAAAGGAGTAGTGATCCTCCCAGATATATTGGCAAATTCAGGAGGAGTTACAGTTAGCTACTTTGAATGGGTGCAGAATATACAAGGGTTCATGTGGGATGAAGAGAAGGTGAACAAAGAGTTGAAGACATACATGACCAAAGGTTTCAAAGATGTGAAGGAGATGTGCAAAACCCATGATTGTGATCTTCGTATGGGAGCCTTTACCCTTGCTGTTAACCGTGTGGCAAGGGCTACACTCCTTAGGGGTTGGGAAGCTTGA 1236 0.4377 MNALAATNRNFRLASKLLGIDSKLAKSLLIPFREVKVECTIPKDDGSLATYVGFRIQHDNSRGPMKGGIRYHPQVETDEVNALAQLMTWKAAVANIPYGGAKGGIGCDPSELTVSELERLTRVFTQKIHDLIGIQIDVPAPDMGTGPQTMAWILDEYSKFHGHSPAIVTGKPIDLGGSLGRDAATGRGVLFATEALLNQHGKTISGQRFVIQGFGNVGSWAAKLISEKGGKVVAVSDITGGIKNSEGLNIPSLLKHSKEHRGVRGFQGGDPIDPNSILLQDCDVLIPAALGGVINRENANEIKAKFVVEAANHPTDPEADEILKKKGVVILPDILANSGGVTVSYFEWVQNIQGFMWDEEKVNKELKTYMTKGFKDVKEMCKTHDCDLRMGAFTLAVNRVARATLLRGWEA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3046 411 SMART ELFV_dehydrog_3 178 408 IPR006096 GO:0006520|GO:0016491
Ahy20g3046 411 CDD NAD_bind_1_Glu_DH 176 402 IPR033922 GO:0016639
Ahy20g3046 411 PANTHER BNAA05G37230D PROTEIN 1 405 - -
Ahy20g3046 411 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 6 178 IPR046346 -
Ahy20g3046 411 PIRSF Glu_DH 1 411 IPR014362 GO:0016639
Ahy20g3046 411 Gene3D Leucine Dehydrogenase, chain A, domain 1 33 175 - -
Ahy20g3046 411 PANTHER GLUTAMATE DEHYDROGENASE 1 405 - -
Ahy20g3046 411 Pfam Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 176 408 IPR006096 GO:0006520|GO:0016491
Ahy20g3046 411 ProSitePatterns Glu / Leu / Phe / Val dehydrogenases active site. 96 109 IPR033524 -
Ahy20g3046 411 Gene3D - 176 410 - -
Ahy20g3046 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 88 102 IPR006095 GO:0006520|GO:0016491
Ahy20g3046 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 336 347 IPR006095 GO:0006520|GO:0016491
Ahy20g3046 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 209 229 IPR006095 GO:0006520|GO:0016491
Ahy20g3046 411 PRINTS Glutamate/leucine/phenylalanine/valine dehydrogenase signature 167 189 IPR006095 GO:0006520|GO:0016491
Ahy20g3046 411 Pfam Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 33 159 IPR006097 GO:0006520|GO:0016491
Ahy20g3046 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 409 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3046 Ahy-Chr20 141168211 141172058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3046 1 296 EF-hand Containing Proteins AT5G07440 75.676 5.28e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3046 K00261 - gmx:100777869 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3046 20 141168211 141172058 Ahy10g2483 10 114388201 114391372 hybridization
Ahy16g2259 16 125290937 125297609 Ahy20g3046 20 141168211 141172058 PCT
Ahy6g1931 6 94487974 94494526 Ahy20g3046 20 141168211 141172058 PCT
Ahy20g3046 20 141168211 141172058 Ahy16g2259 16 125290937 125297609 PCT
Ahy20g3046 20 141168211 141172058 Ahy6g1931 6 94487974 94494526 PCT