Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2500 ATGAAGACAAGAGCAGGAGACACGATGTTTGGTCAAATAGGATCCATAATTGCTTCATTGATGTTTATTTGGGCCATATTCGAGAAATTCTTCCCATTCCAAATCCGAAACCAAGCACAAAAACATACTCTAAGGTTGTTCTCTTTTGTTTACCCCTACATCCAAATCACATTCAATGAACTCATTGGTGATAGACACATGAGTAGAAGTGAGGCTTATACTTCCATACAGAATTACCTTTCTTCCAAGGCCACAACACAAGCTAAGAGACTCAAAGGTGACATAGGCAAGAACAACCAAACCCTTCTTCTTACCATGGATGACCATGAAGAAGTGTGTGATGAGTTCAATGGTGTTAAGCTTTGGTGGGTTTCTGGCAAAAACGTTGCCAAATCCCAAACTCTTTCTCTACACAACAATTTAGCGGACGAGAAAAGGTACTACAAGCTTACCTTCCATAAACACCATAGAAACATGGTTTTAGGAACATATCTTAATCATGTTATGAGAGAAGGTAAAGCGGTTATGGTTAGAAATAGGCAGAGGAAGCTTTATACTAATAGCGGTTCGTTTTGGAACCATGTTGTGTTTGAGCATCCGGCAACGTTTGAAAGCGTGGCGATGGACGAGGAACTGAAGAAAAGAATCATTGACGATTTGGTAACGTTTAGTAAGTCAAGGGAGTTTTATGCAAGAATTGGAAGGGCCTGGAAGAGAGGGTATTTACTTTTTGGTCCTCCGGGAACGGGGAAGTCGACGATGATCGCGGCGATGGCGAATCTGTTGGGATATGATTTGTATGATTTGGAACTCACTGCTGTGAAGGACAACACAGAGCTGCGGAAGCTGTTGATTGAGACATCAAGCAAGTCCATTATTGTGATTGAGGACATAGATTGTTCACTTGATCTAACTGGTCAGAGGAGGAAGAAAATGGAAAGAGCGAAGGAAGATGAAGAAGAAGAAGAAGATGATCAACGGAAGAAGAAGCAAAGTGGGTTGAAAGAAAGGGATGTTAAGAGCAGCCAGGTTACACTCTCAGGGCTTCTGAACTTCATTGATGGATTGTGGTCTGCATGTGGAGGAGAGAGGCTAATAGTTTTCACTACAAACTATGTTGAGAAATTGGATCCAGCATTGGTGAGAAGAGGGAGAATGGACATGCACATTGAATTATCATACTGTGGATTTGAGGCATTCAAGTTGCTGGCCAAGAATTACCTTAACATTGAATCACACCATTTGTTTTCAACAATTTCTGACTTGCTCAAACACTCTCAAATCACACCAGCTGATGTTGCTGAGCACTTTATGCCCAAACCTGCTTTTGGGAACAATCCAGACCTTTATTTGAAGGCTTTGATTCAATCACTTGAAGAAACCAACTTCAAACAGAACAAACATGCAACCAATACTTAA 1419 0.4109 MKTRAGDTMFGQIGSIIASLMFIWAIFEKFFPFQIRNQAQKHTLRLFSFVYPYIQITFNELIGDRHMSRSEAYTSIQNYLSSKATTQAKRLKGDIGKNNQTLLLTMDDHEEVCDEFNGVKLWWVSGKNVAKSQTLSLHNNLADEKRYYKLTFHKHHRNMVLGTYLNHVMREGKAVMVRNRQRKLYTNSGSFWNHVVFEHPATFESVAMDEELKKRIIDDLVTFSKSREFYARIGRAWKRGYLLFGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKMERAKEDEEEEEDDQRKKKQSGLKERDVKSSQVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALVRRGRMDMHIELSYCGFEAFKLLAKNYLNIESHHLFSTISDLLKHSQITPADVAEHFMPKPAFGNNPDLYLKALIQSLEETNFKQNKHATNT* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2500 472 Gene3D - 391 462 - -
Ahy20g2500 472 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Ahy20g2500 472 Coils Coil 302 332 - -
Ahy20g2500 472 CDD AAA 227 394 - -
Ahy20g2500 472 MobiDBLite consensus disorder prediction 313 336 - -
Ahy20g2500 472 SMART AAA_5 237 396 IPR003593 -
Ahy20g2500 472 Pfam Domain associated at C-terminal with AAA 31 125 IPR025753 -
Ahy20g2500 472 Pfam ATPase family associated with various cellular activities (AAA) 242 393 IPR003959 GO:0005524|GO:0016887
Ahy20g2500 472 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 7 464 - -
Ahy20g2500 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 439 IPR027417 -
Ahy20g2500 472 Gene3D - 193 390 IPR027417 -
Ahy20g2500 472 PANTHER BCS1 AAA-TYPE ATPASE 7 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2500 Ahy-Chr20 132172112 132174776 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2500 202 387 Miscellaneous Gene Families AT5G58870 29.381 6.08e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2500 K08900 - rcu:8275997 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1826 11 118358316 118360746 Ahy20g2500 20 132172112 132174776 ECH
Ahy20g2500 20 132172112 132174776 Ahy20g2500 20 132172112 132174776 ECH
Ahy20g2500 20 132172112 132174776 Ahy10g2015 10 107079760 107082439 hybridization