Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2440 ATGTTGATTCAGATTCCTCGCTTCACAAACTCCCTCAGAAACCCCTTCGATGTCGACCAAGCCTACATCCATCGCAAAACCCTACTCCACAATCAAAATCCTCGCAATTCTGCGAACTCGCTTGATGAATCGGTACTTGCACGGAAGATCGTGGTTGGATGGGAAGAAGCTTCGTGGGAAGTGAGGCAGGCGTACAAGCAGTTTATAGGAGCAGTGGTGGAGCTGACTGATGGCGAAATGCGCTCTGAGGAGTTCCATGAAGTGGCGCTGACCGTGTACCGCCATTTCGGCAGGCCGATGGAGGATGAGGATTATCTTGATAGAATTATTGCGGATAAGAAGTTAGAATTGCAAAAGCTTGTTGGTCATGCTATTGCCGATACAAAGTTGAGGCATGTTGCGTCTCTAGCACAGAATCTTCTGAACTTGCAGCCTAGCAATAAACGCCCTGCCTTGTCTTCGGAAAGAAATCTGGATGATAATGAGGATTTGGAATTCGGGGCTGATTTTGTTTTCCAAGCACCAACGCGTTTTTTGGTTGATGTATCATTTGATAATGTAGATATGATGGATTTCAGGAGCACACTTCCTGTATCATTTCATGAAGAACAATATGCTCTTACTATTCCAACAGATCAGTCTGTTGATGCAGAAAAGTTCAACTTGACTTGGTTAAGAGAAGCATGTGATAAAATAGCTAGGAATTCTAATTCTCAGATATCCCGAGATGAATTAGCAATGGCCATCTGTAGGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCAGGAGATCTGTTAGATCTGGCTGGTGATAGTGCATTTGAAACTGTGCAAAATCTTCTATTGCATCGAAAGGAGATTGTTGATTCAATTAATCATGGCTTGTCAGTATTGAAGTCTGATAAAAATGCTCCAAATTCTCAGTCTCGTATGCCTAGTTATGGGACGCAGGTTATCGTTCAAACAGAGTCAGAAAAGCAAATTGACAAGCTTCGGCGCAAGGAGGAAAAGCGAAACAGAAGGGGAATAGAATATGGCGGTGATGGTGACTTATCTGCATCTGACTTCTCGTCTTTACTACAAGCAAGTGAGAGGAAGAATTTATTTGATGATTTGATTGGTTCTGGGGATAAGTCCCAGTCAATAGCCGTAACTGCTCTTCCTGAAGGAACTGCGAGAAAGCATTTTAAAGGGTATGAAGAGGTTACCATTCCTCCTAAACCAACAGCGCCAATGAAACCTGGAGAAAAGCTGATTGAGATAAGGGAGTTAGATGACTTTGCTCAAGCTGCGTTCCGTGGTTACAAAACGCTAAACCGTATCCAGAGCAGAATATTTCAAACTGTTTATGGCACTAATGAGAATATACTGGTGTGTGCTCCCACAGGAGCTGGGAAAACTAACATAGCCATGATTTCAATTCTACATGAGATCGGACAGCATTTTAGGGATGGTTACTTGCACAAAGATGAATTTAAGATAGTTTATGTGGCTCCAATGAAGGCTTTGGCTGCGGAAGTCACATCAGCATTTAGCCAACGTCTATCTCCTTTGAATATGGTTGTCAGGGAGCTAACTGGAGATATGCAGCTTTCTAAGAATGAACTTGAAGAAACTCAGATGATAGTGACAACCCCTGAGAAATGGGATGTCATTACTCGCAAGAGTAGTGACATGTCACTCTCTATGCTGGTAAAGCTCTTGATCATCGATGAAGTGCACCTACTCAATGATGATAGAGGTCCTGTAATAGAGGCCCTAGTTGCTAGGACCCTACGGCAGGTGGAGTCAACTCAAACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACCTGGAGGTTGCTCAATTTCTTAGAGTAAATGCAGATACAGGTCTTTTCTTCTTTGATTCTAGTTATCGTCCAGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCCAAATTTCGCAGCTCGAAATGAATTGTTGAATGATATATGTTATAAGAAGGTTGTTGATTCTATCAGGCAAGGTCATCAGGCAATGGTATTTGTCCATTCACGGAAAGACACTACAAAGACTGCTGAGAAGCTGGTTGAGCTTGCTCGGAGGAGTGAGGATTTGGAACTCTTTGGAAATGATACTCATCCACAGTTTAACTTAATGAAGAAGGAAGTAATTAAATCCAGAAACAGAAATCTTGTTGAACTTTTTGAATATGGCATGGGTGTTCATCATGCTGGGATGTTACGTGCAGATAGAGGGCTTACTGAGCGGCTTTTCTCTGAGGGTCTCCTGAAGGTACTTGTCTGTACAGCAACATTGGCATGGGGTGTCAATCTTCCTGCTCACACAGTTGTCATTAAGGGTACCCAATTGTATGATCCAAAAGCTGGTGGGTGGCGAGATCTGGGTATGCTTGATGTTATGCAGATATTTGGCCGAGCTGGCAGACCTCAGTTTGACAAAAGTGGTGAAGGTATCATAATTACATCTCATGATAAACTAGCTTATTATCTGCGACTGCTGACAAGTCAACTCCCTATAGAAAGCCAGTTCATTAGCTCCTTGAAAGATAATTTGAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTCAAAGAAGCCTGTGCATGGCTTGGCTATACCTATCTCTTCATACGGATGAGGATGAATCCATTGGCATATGGTATAGGATGGGATGAGGTGATGGCAGATCCTGGCTTAACGTCTAAGCAAAGATCTTTTGTAATTGATGCTGCACGTGCACTCGATAAAGCTAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTACTGTACTGAGCTTGGTCGCATTGCAAGCCATTTTTACATACAATATTCCAGTGTTGAAACATATAATGAAATGTTGAGACGCCACATGAGTGACAGTGAGGTGATTAGCATGGTTGCACATTCATCTGAATTTGAGAATATTGTTGTTCGAGAAGAAGAACAGAATGAGCTAGAGATGTTGGTTCGCTCATCATGTCCATTAGAAGTTAGGGGTGGTCCTTCCAATAAACATGGAAAGATATCCATTTTGATTCAGTTGTATATATCTCGAGGGTCTATAGATTCTTTTTCTTTGGTATCTGATGCTGCATACATAAGTGCAAGCTTAGCTCGTATAATGCGGGCTTTATTTGAGATTTGTCTGCGAAGGGGCTGGTGTGAAATGTCTTTGTTTATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCACACCAACATCCTCTTAGACAGTTTGATAAGGACATTTCTGGAGAGATATTGCGGAAGCTCGAAGAACGTGGGGCTGACCTAGATCGCCTGTTGGAGATGGAGGAAAAAGACATTGGGGCGTTAATTCGTTATGCACCTGGAGGAAAATTGGTCAAGCAATACCTGGGGTATTTTCCATCAATTCAGTTATCAGCGACAGTCAGTCCGATAACTAGAACTGTTCTGAAGGTTGATTTGGTGATAATGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGCTGGTGGATTTTGGTAGAGGACTCTGAGAATGATCACATTTACCACTCAGAACTCTTTACTCTGACAAAGCGGATGGCTAAAGGGGAACCTTATAAACTTTCCTTCACTGTGCCCATATTTGAACCACACCCGCCACAGTATTACATTCATGCTATTTCTGATTCTTGGCTTCAAGCAGAAGCATTCTACACTATTACTTTTCATAATTTACCATTGCCAGAGGCTAGGACTTCTCACACTGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCCCTAGGCAATGTTGCTTATGAAGCGTTATATAGATTTTCACATTTTAATCCTATACAAACACAGATTTTTCATGTCTTGTATCACACGGACAATAATGTTCTATTAGGAGCTCCAACTGGAAGTGGTAAAACTATATCTGCTGAGCTTGCTATGCTTCATCTTTTCAACACGCAGCCTGATATGAAGGTTATTTATATAGCACCTTTGAAGGCTATTGTCAGGGAAAGAATGGGTGATTGGCAAAGGCGTCTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACAGGAGACTATACACCAGATTTGATGGCCCTTTTGTCTGCAGATATCATCATATCTACCCCTGAAAAATGGGATGGTATCAGTCGTAATTGGCATACACGCAGCTATGTCACAAAGGTTGGACTCATGATATTGGATGAGATTCACTTATTGGGAGCTGATCGTGGACCCATACTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCACAAACAGAGCGAGCAATAAGATTTGTTGGCCTCTCTACAGCTCTAGCAAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAGACTGGCCTCTTCAATTTCAAGCCAAGTGTGAGACCTGTACCTCTGGAGGTTCATATCCAGGGCTATCCTGGAAAGTATTATTGCCCAAGGATGAACAGTATGAATAAACCAGCGTATGCAGCAATATGCACACATTCACCTGCTAAACCTGTTCTTATATTTGTCTCTTCACGACGCCAGACAAGGCTGACTGCACTGGACCTAATTCAGTTTGCTGCCTCAGACGAGCATCCAAGGCAGTTCCTTGATATGCCAGAAGATGCACTGCAGATGGTTCTGTCCCAAGTCTCTGACCAAAACCTGAGGCATACTTTACAATTTGGTATTGGGTTACACCATGCAGGCCTGAATGACAAAGACAGATCATTGGTTGAGGAACTTTTTGCAAACAACAAGATTCAGATACTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGTACAGAATACTATGATGGAAAATCAAAGAGGTATGTAGATTTTCCAATCACTGATATCTTGCAAATGATGGGTCGTGCTGGAAGGCCTCAGTTTGATCAGCATGGGAAAGCAGTGATTCTTGTTCATGAACCAAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCTTTTCCAGTTGAAAGTAGTCTGAGGGAGCACCTGCATGATCACCTCAATGCTGAAATTATTTCTGGAACCATTTGCAATAAACAAGATGCAGTGCACTACCTTACATGGACTTACTTATTCCGTAGACTGATGGTTAATCCTGCTTACTATGGATTGGAGAATGCCGACCCTGAATTTATCAGTTCATATCTGTCTAGTCTAGTACAGAGTACATTTGAGGACTTGGAAGACAGTGGATGCATAAAAATGAATGAAGACACTGTAGAATCAATGATGTTGGGTTCAATAGCATCTCAGTATTACCTAAGCTACATGACAGTATCAATGTTTGGTTCAAACATAGGTCCTGATACATCACTTGAAGTGTTTTTGCACGTCTTATCTGCTGCTTCCGAATTTGATGAACTCCCTGTGCGTCATAATGAGGAAAAATACAATGAAGGACTGTCTCAGAAAGTTAAATATCCAGTGGATAACAACCGTTTGGATGACCCCCATGTCAAAGCAAATCTTCTATTTCAGGCTCATTTCTCTCAGTTGGACTTACCAATTAGTGACTATGTCACGGACTTGAAGTCAGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAACAGTGGTTGGCTTTCAAGCTCACTCACTTGCATGCATCTTCTGCAAATGGTCATGCAGGGGCTGTGGTTTGAAAAGGACTCTTCCTTATGGATGCTGCCATGCATGAATGCTGATCTAATGCAATCCCTTAGCAGAAGTGGAATTTCCAGTGTACAGGAATTACTAGATATTCCCAAGGCATCCTTGCAAAATGTAACAGGAAGTTTTCCGGCTTCAAGATTGTACCAGGACCTACAGCACTTCCCTCGTGTTAAAATGAAGTTAAAGCTTCAGAAGAAGGAAACTAATGGTGAGAGCTCTGATGCATTGTACATCAGATTGGAGAAGTCCAATTCTAGACGACACTCCTCTCGAGCATTTGTACCTCGATTTCCAAAGATAAAAGAAGAGCAGTGGTGGTTGGTTCTTGGTAATACCTCTACATCTGAGTTATATGCATTGAAGCGAGTGTCTTTTTCTGATCAGTTGGTTACCTTGATGAAGCTGCCTCATACACCATCCAACCTTAAGGGTATGAAACTCATATTAGTCTCAGATTGTTACATTGGATTTGAGCAAGAACACTCCATTGAAGGACTTATTGGAGGCCGGCATTAG 6270 0.4196 MLIQIPRFTNSLRNPFDVDQAYIHRKTLLHNQNPRNSANSLDESVLARKIVVGWEEASWEVRQAYKQFIGAVVELTDGEMRSEEFHEVALTVYRHFGRPMEDEDYLDRIIADKKLELQKLVGHAIADTKLRHVASLAQNLLNLQPSNKRPALSSERNLDDNEDLEFGADFVFQAPTRFLVDVSFDNVDMMDFRSTLPVSFHEEQYALTIPTDQSVDAEKFNLTWLREACDKIARNSNSQISRDELAMAICRVLNSEKPGEEIAGDLLDLAGDSAFETVQNLLLHRKEIVDSINHGLSVLKSDKNAPNSQSRMPSYGTQVIVQTESEKQIDKLRRKEEKRNRRGIEYGGDGDLSASDFSSLLQASERKNLFDDLIGSGDKSQSIAVTALPEGTARKHFKGYEEVTIPPKPTAPMKPGEKLIEIRELDDFAQAAFRGYKTLNRIQSRIFQTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSAFSQRLSPLNMVVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNADTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYKKVVDSIRQGHQAMVFVHSRKDTTKTAEKLVELARRSEDLELFGNDTHPQFNLMKKEVIKSRNRNLVELFEYGMGVHHAGMLRADRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPGLTSKQRSFVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMSDSEVISMVAHSSEFENIVVREEEQNELEMLVRSSCPLEVRGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHQHPLRQFDKDISGEILRKLEERGADLDRLLEMEEKDIGALIRYAPGGKLVKQYLGYFPSIQLSATVSPITRTVLKVDLVIMPVFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMAKGEPYKLSFTVPIFEPHPPQYYIHAISDSWLQAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNVAYEALYRFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMGDWQRRLVSQLGKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAIRFVGLSTALANAGDLADWLGVEETGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLDMPEDALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHDHLNAEIISGTICNKQDAVHYLTWTYLFRRLMVNPAYYGLENADPEFISSYLSSLVQSTFEDLEDSGCIKMNEDTVESMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHVLSAASEFDELPVRHNEEKYNEGLSQKVKYPVDNNRLDDPHVKANLLFQAHFSQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSLTCMHLLQMVMQGLWFEKDSSLWMLPCMNADLMQSLSRSGISSVQELLDIPKASLQNVTGSFPASRLYQDLQHFPRVKMKLKLQKKETNGESSDALYIRLEKSNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSFSDQLVTLMKLPHTPSNLKGMKLILVSDCYIGFEQEHSIEGLIGGRH* 2090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2440 2089 Gene3D - 940 1082 - -
Ahy20g2440 2089 Pfam DEAD/DEAH box helicase 1289 1453 IPR011545 GO:0003676|GO:0005524
Ahy20g2440 2089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1296 1471 IPR014001 -
Ahy20g2440 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 846 IPR027417 -
Ahy20g2440 2089 CDD SF2_C_Ski2 638 829 - -
Ahy20g2440 2089 PANTHER SEC63 DOMAIN-CONTAINING 428 468 - -
Ahy20g2440 2089 Gene3D - 1084 1138 - -
Ahy20g2440 2089 Gene3D - 427 638 IPR027417 -
Ahy20g2440 2089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 863 IPR001650 -
Ahy20g2440 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 623 IPR027417 -
Ahy20g2440 2089 Gene3D - 639 841 IPR027417 -
Ahy20g2440 2089 Pfam Helicase conserved C-terminal domain 671 816 IPR001650 -
Ahy20g2440 2089 Pfam Helicase conserved C-terminal domain 1567 1652 IPR001650 -
Ahy20g2440 2089 Gene3D - 848 938 IPR036388 -
Ahy20g2440 2089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1502 1711 IPR001650 -
Ahy20g2440 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1473 1682 IPR027417 -
Ahy20g2440 2089 Gene3D C2 domain 1973 2083 IPR035892 -
Ahy20g2440 2089 SUPERFAMILY "Winged helix" DNA-binding domain 846 951 IPR036390 -
Ahy20g2440 2089 MobiDBLite consensus disorder prediction 326 348 - -
Ahy20g2440 2089 SMART Sec63_2 1770 2083 IPR004179 -
Ahy20g2440 2089 SMART Sec63_2 939 1247 IPR004179 -
Ahy20g2440 2089 CDD SF2_C_Ski2 1478 1666 - -
Ahy20g2440 2089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 448 630 IPR014001 -
Ahy20g2440 2089 SMART AAA_5 453 634 IPR003593 -
Ahy20g2440 2089 SMART AAA_5 1301 1534 IPR003593 -
Ahy20g2440 2089 Gene3D C2 domain 1141 1250 IPR035892 -
Ahy20g2440 2089 SUPERFAMILY Sec63 N-terminal domain-like 1803 1958 - -
Ahy20g2440 2089 Pfam Sec63 Brl domain 939 1245 IPR004179 -
Ahy20g2440 2089 Pfam DEAD/DEAH box helicase 441 614 IPR011545 GO:0003676|GO:0005524
Ahy20g2440 2089 SMART helicmild6 726 818 IPR001650 -
Ahy20g2440 2089 SMART helicmild6 1566 1654 IPR001650 -
Ahy20g2440 2089 PANTHER SEC63 DOMAIN-CONTAINING 469 2082 - -
Ahy20g2440 2089 Gene3D - 1684 1777 IPR036388 -
Ahy20g2440 2089 CDD DEXHc_ASCC3_1 438 634 - -
Ahy20g2440 2089 Pfam Sec63 Brl domain 1771 2081 IPR004179 -
Ahy20g2440 2089 CDD DEXHc_ASCC3_2 1286 1474 - -
Ahy20g2440 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1173 1471 IPR027417 -
Ahy20g2440 2089 MobiDBLite consensus disorder prediction 326 346 - -
Ahy20g2440 2089 PIRSF BRR2 11 2087 - -
Ahy20g2440 2089 Gene3D - 1778 1914 - -
Ahy20g2440 2089 SUPERFAMILY Sec63 N-terminal domain-like 967 1142 - -
Ahy20g2440 2089 SMART ultradead3 1283 1487 IPR014001 -
Ahy20g2440 2089 SMART ultradead3 435 646 IPR014001 -
Ahy20g2440 2089 SUPERFAMILY "Winged helix" DNA-binding domain 1682 1782 IPR036390 -
Ahy20g2440 2089 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 428 468 - -
Ahy20g2440 2089 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 469 2082 - -
Ahy20g2440 2089 Gene3D - 1252 1478 IPR027417 -
Ahy20g2440 2089 Coils Coil 1100 1120 - -
Ahy20g2440 2089 Gene3D - 1479 1683 IPR027417 -
Ahy20g2440 2089 SUPERFAMILY E set domains 1992 2081 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2440 Ahy-Chr20 130156743 130179781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2440 K18663 - gmx:100811503 3774.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2440 20 130156743 130179781 Ahy20g2440 20 130156743 130179781 ECH
Ahy20g2440 20 130156743 130179781 Ahy10g1958 10 105713638 105736198 hybridization