Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2275 ATGGCGACGCCCTCGTTGGACGAACAAACATCTAAGAAAGTCATTAGACAAGTTGAGTTCTACTTCAGCGACAGCAACCTTCCCACCGATAATTTCATGCGGAAAACTGTATCTGAAAGCGAAGATGGCATGGTTAGTTTGGCGTTGCTTTGTTCATTCAATAGAATGAGAAAGCACCTTAATCTTGGTGATGTGAAGGCTGATGAGATTTCGAAAGACACTGTTGCTGCTGTTGCTCAAGCTTTGAGAAGTTCTTCATCTCTCAAGGTCTCTGAAGATGGGGAAAAAGTTGGTAGGACAAAAGAACTTCCAAAACCAGAGGAGGTTATTGAGCAGGTGGAGGGAAGAACAGTTGCTGCATCCCCATTTGAATATAACTTGAAGATGGAAGATGTGGAGGCATTCTTTGGTCAACATGCCAAGGTCAATAGTGTTCGTCTGCCCCGGCATGTTGGAGACAAAAGGTTCTTCTGTGGCACCGCCCTCATTGAGTTTTCATCAGAGGAAGATGTAGAAAAAATTTTGAAACAAAAACTGGTCTATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGAATTTGATGTGGAGAGAGAAAAGGAAAAAGAAGAATTTGAAAAATCTCGTCCTCCTGTGGGCTCAAATCACCAGAATAATAACTCCAATGCAGAAGACAACTTCCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAGTTCCTTCCAACCAAGGTGGTGCTGATCAACTGGCCATTGGCAATGGCAATGGCCACAAAACAGATGGGACAAATCCCACTGAAGTTGCTGCTGGAGAAAGTGATGAAAAGGTATCAGAAAGTGCTGAGGATGACAAAGAAAATAATGAGGAGAAAGAAGGAAAGGAAACTGAAAGTGAGGAAAAAGAAGCTGAAAGTGAGGAAAAGGAAACTGAAAGTGAAGAAAAGGAAACTGAAAGTGACGAAAAGGGTCTAGAAACTGATGAAAAAATTTCACCCCCTGCTTACAAGGGTGACAAGAATGTTGTTTCGCGTGAGGATTTGAAGGTTATCTTTCAGAAGTTTGGTACTGTGAAGTTCATTGATTTCACGATTGGAGATGAGTCAGGATACATCCGGTTTGAAGAAGCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCGGTACTTACTGATAAGGGTGGCTTGCCTGTGAAGAATTTTGTTGCTATCCTAGATCCAGTGACTGGTGAGGCTGAAAGAGAATACTGGAGCCTTCTCCGCAAAAACCAAGACAAGAAGTACCGCGAGTTTAAGGGTAATCGAGGAAGGGGAGGAAGGCATGGTGGTAGAGGAGGAAAACATGCACGCTCTAGAGATAATGGATCACGAAATCGCCCAAACAAATCTCAGAAAGTTTAA 1407 0.4279 MATPSLDEQTSKKVIRQVEFYFSDSNLPTDNFMRKTVSESEDGMVSLALLCSFNRMRKHLNLGDVKADEISKDTVAAVAQALRSSSSLKVSEDGEKVGRTKELPKPEEVIEQVEGRTVAASPFEYNLKMEDVEAFFGQHAKVNSVRLPRHVGDKRFFCGTALIEFSSEEDVEKILKQKLVYAGAELELKPKKEFDVEREKEKEEFEKSRPPVGSNHQNNNSNAEDNFPKGLIIAFKLKSISDEVPSNQGGADQLAIGNGNGHKTDGTNPTEVAAGESDEKVSESAEDDKENNEEKEGKETESEEKEAESEEKETESEEKETESDEKGLETDEKISPPAYKGDKNVVSREDLKVIFQKFGTVKFIDFTIGDESGYIRFEEAEAAQKARAAAVLTDKGGLPVKNFVAILDPVTGEAEREYWSLLRKNQDKKYREFKGNRGRGGRHGGRGGKHARSRDNGSRNRPNKSQKV* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2275 468 SMART rrm1_1 343 408 IPR000504 GO:0003723
Ahy20g2275 468 SMART rrm1_1 117 189 IPR000504 GO:0003723
Ahy20g2275 468 Pfam La domain 14 83 IPR006630 -
Ahy20g2275 468 MobiDBLite consensus disorder prediction 303 318 - -
Ahy20g2275 468 Coils Coil 290 325 - -
Ahy20g2275 468 CDD LA_like_plant 10 99 - -
Ahy20g2275 468 ProSiteProfiles xRRM domain profile. 330 450 IPR014886 GO:0003723
Ahy20g2275 468 SUPERFAMILY RNA-binding domain, RBD 107 191 IPR035979 GO:0003676
Ahy20g2275 468 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Ahy20g2275 468 SMART la 8 100 IPR006630 -
Ahy20g2275 468 MobiDBLite consensus disorder prediction 276 302 - -
Ahy20g2275 468 Gene3D - 338 437 IPR012677 -
Ahy20g2275 468 Pfam RNA binding motif 340 435 IPR014886 GO:0003723
Ahy20g2275 468 MobiDBLite consensus disorder prediction 195 210 - -
Ahy20g2275 468 MobiDBLite consensus disorder prediction 319 346 - -
Ahy20g2275 468 PANTHER LUPUS LA PROTEIN-RELATED 4 468 IPR045180 -
Ahy20g2275 468 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g2275 468 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g2275 468 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy20g2275 468 MobiDBLite consensus disorder prediction 430 468 - -
Ahy20g2275 468 PANTHER OS02G0610400 PROTEIN 4 468 - -
Ahy20g2275 468 Gene3D - 2 104 IPR036388 -
Ahy20g2275 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Ahy20g2275 468 MobiDBLite consensus disorder prediction 211 225 - -
Ahy20g2275 468 MobiDBLite consensus disorder prediction 244 271 - -
Ahy20g2275 468 SUPERFAMILY RNA-binding domain, RBD 346 421 IPR035979 GO:0003676
Ahy20g2275 468 MobiDBLite consensus disorder prediction 195 225 - -
Ahy20g2275 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 177 IPR000504 GO:0003723
Ahy20g2275 468 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Ahy20g2275 468 MobiDBLite consensus disorder prediction 244 346 - -
Ahy20g2275 468 CDD RRM1_La 117 189 - -
Ahy20g2275 468 Gene3D - 106 200 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2275 Ahy-Chr20 124984699 124988367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2275 K11090 - gmx:100786016 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2275 20 124984699 124988367 Ahy20g2275 20 124984699 124988367 ECH
Ahy20g2275 20 124984699 124988367 Ahy10g1811 10 101528247 101531977 hybridization