Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1811 ATGGCGACGCCCTCCTTGGACGAACAAACATCTAAGAAAGTCATTAGACAAGTTGAGTTCTACTTCAGCGACAGCAACCTTCCCACCGATAATTTCATGCGGAAAACTGTATCTGAAAGCGAAGATGGCATGGTTAGTTTGGCGTTGCTTTGTTCATTCAATAGAATGAGAAAGCACCTTAATCTTGGTGATGTGAAGGCTGATGAGATTTCGAAAGACACTGTTGCTGCTGTTGCTCAAGCTTTGAGAAGTTCTTCATCTCTCAAGATCTCTGAAGATGGGAAAAAAGTTGGTAGGACAACGGAACTTCCAAAACCAGAGGAGGTTATTGAGCAGGTGGAGGGAAGAACAGTTGCTGCATCCCCATTTGAATATAACTTGAAGATGGAAGATGTGGAGGCATTCTTTGGTCAACATGCCAAGGTCAATAGTGTTCGTCTGCCCCGGCATGTTGGAGACAAAAGGTTCTTCTGTGGCACCGCCCTCATTGAGTTTTCATCAGAGGAAGATGTAGAAAAAATTTTGAAACAAAAACTGGTCTATGCTGGGGCTGAGTTAGAACTAAAACCAAAGAAGGAATTTGATGTGGAGAGAGAAAAGGAAAAAGAAGAATTTGAAAAATCTCGTCCTCCTGTGGGCTCAAATCACCAGAATAATAACTCCAATGCAGAAGACAACTTCCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAGTTCCTTCCAACCAAGGTGGTGCTGATCAACTGGCCAATGGCAATGGCAATGGCCACAAAACGGATGGGACAAATCCCACTGAAGTTGCTGCTGGAGAAAGTGATGAAAAGGCATCAGAAAGTGCTGAGGATGACAAAGAAAATAATGCGGAGAAAGAAGGAAAGGAAACTGAAAGTGAGGAAAAAGAAGGAAAGGAAACTGAAAGTGAGGAAAAAGAGGCTGAAAGTGAGGAAAAAGAAGCTGGAAGTGAGGAAAAGGAAACTGAAAGTGAAGATAAGGAAACTGAAAGTGAAGAAAAGGGTCTAGAAACTGATGAAAAAATTTCACCCCCTGCTTACAAGGGTGACAAGAATGTTGTTTCGCGTGAGGATTTGAAGGTTATCTTTCAGAAGTTTGGTACTGTGAAGTTCATTGATTTCACGATTGGAGATGAGTCAGGATACATCCGGTTTGAAGAAGCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGTGGTACTTACTGATAAGGGTGGCTTGCCTGTGAAGAATTTTGTTGCTATCCTAGATCCAGTGACTGGTGAGGCTGAAAGAGAATACTGGAGCCTTCTCCGCAAAAACCAAGACAAGAAGTACCGCGAGTTTAAGGGTAATCGAGGAAGGGGAGGAAGGCATGGTGGTAGAGGAGGAAAACATGCACGCTCTAGAGATAATGGATCACGAAATCGCCCAAACAAATCTCAGAAAGTTTAA 1458 0.4287 MATPSLDEQTSKKVIRQVEFYFSDSNLPTDNFMRKTVSESEDGMVSLALLCSFNRMRKHLNLGDVKADEISKDTVAAVAQALRSSSSLKISEDGKKVGRTTELPKPEEVIEQVEGRTVAASPFEYNLKMEDVEAFFGQHAKVNSVRLPRHVGDKRFFCGTALIEFSSEEDVEKILKQKLVYAGAELELKPKKEFDVEREKEKEEFEKSRPPVGSNHQNNNSNAEDNFPKGLIIAFKLKSISDEVPSNQGGADQLANGNGNGHKTDGTNPTEVAAGESDEKASESAEDDKENNAEKEGKETESEEKEGKETESEEKEAESEEKEAGSEEKETESEDKETESEEKGLETDEKISPPAYKGDKNVVSREDLKVIFQKFGTVKFIDFTIGDESGYIRFEEAEAAQKARAAVVLTDKGGLPVKNFVAILDPVTGEAEREYWSLLRKNQDKKYREFKGNRGRGGRHGGRGGKHARSRDNGSRNRPNKSQKV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1811 485 SMART la 8 100 IPR006630 -
Ahy10g1811 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 177 IPR000504 GO:0003723
Ahy10g1811 485 PANTHER LUPUS LA PROTEIN-RELATED 2 270 IPR045180 -
Ahy10g1811 485 SUPERFAMILY RNA-binding domain, RBD 107 191 IPR035979 GO:0003676
Ahy10g1811 485 Gene3D - 355 454 IPR012677 -
Ahy10g1811 485 PANTHER BNAANNG34180D PROTEIN 313 485 - -
Ahy10g1811 485 CDD LA_like_plant 10 99 - -
Ahy10g1811 485 Pfam La domain 14 83 IPR006630 -
Ahy10g1811 485 MobiDBLite consensus disorder prediction 276 312 - -
Ahy10g1811 485 Pfam RNA binding motif 357 452 IPR014886 GO:0003723
Ahy10g1811 485 MobiDBLite consensus disorder prediction 243 271 - -
Ahy10g1811 485 MobiDBLite consensus disorder prediction 322 362 - -
Ahy10g1811 485 SMART rrm1_1 360 425 IPR000504 GO:0003723
Ahy10g1811 485 SMART rrm1_1 117 189 IPR000504 GO:0003723
Ahy10g1811 485 ProSiteProfiles xRRM domain profile. 347 467 IPR014886 GO:0003723
Ahy10g1811 485 MobiDBLite consensus disorder prediction 195 210 - -
Ahy10g1811 485 Coils Coil 298 330 - -
Ahy10g1811 485 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Ahy10g1811 485 Gene3D - 106 200 IPR012677 -
Ahy10g1811 485 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy10g1811 485 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy10g1811 485 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy10g1811 485 PANTHER BNAANNG34180D PROTEIN 2 270 - -
Ahy10g1811 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Ahy10g1811 485 MobiDBLite consensus disorder prediction 211 225 - -
Ahy10g1811 485 Gene3D - 2 104 IPR036388 -
Ahy10g1811 485 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Ahy10g1811 485 PANTHER LUPUS LA PROTEIN-RELATED 313 485 IPR045180 -
Ahy10g1811 485 MobiDBLite consensus disorder prediction 243 362 - -
Ahy10g1811 485 MobiDBLite consensus disorder prediction 195 225 - -
Ahy10g1811 485 MobiDBLite consensus disorder prediction 447 485 - -
Ahy10g1811 485 CDD RRM1_La 117 189 - -
Ahy10g1811 485 SUPERFAMILY RNA-binding domain, RBD 363 438 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1811 Ahy-Chr10 101528247 101531977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1811 K11090 - gmx:100803099 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2275 20 124984699 124988367 Ahy10g1811 10 101528247 101531977 hybridization