Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g2138 ATGAACTTGTCCAAGAAAGTATCCCAAACGGATGCAAAGCTAAGCAGCCCAAACAAGGCAACCACTTTGAATCCAAATGCAGCAGAGTTTGTTCCTTTTTCTCTCAGAACATCGTTCTCTGGAACTGCCAGCTCGGTTGATGCAACAGCAAGGCTTGCCAATGCTGGGGCTCTTGGAAAAGCAGTTTTAGATCGGTCAGAATCATCCATTTCAAACAATTCCGATGATGAGGTTCACCAATACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTCAAGGTCGCGGGAGAAGATGTATCCCAAGATGTTAATGACCTTTCTTTAGCTGGCTTATCTATGCATGATGACATTGAGGGCTTGAGGTTTGCCTCATCTAAAGGAAGTAGATATATATTAAATGAGCAGGAGGAATTATCTCAGCAGCACATTAATGGCAACAGTTTTACTGATAGATTAAGGTTTTCCAATTCTAGCTTTAGGGAGGACCCATCTTCAGCAAGCTTTTTGAACACTTCAACAAATCCATGGGATAGGCCAATTGGGAATGCCAACCAGTTTGTTAGCAGTGGTCAAGAGGGGCTTACTTATGATGACAACTCAAGACATGGATTTTTTAATGACATCTTTTCTGAGAATGCAATCGTGAATGATACTAATTTGAACCCCTTGGAGTTTCTGGCTTCTCTGTTCCCTGGTTTTGCGGCAGAAAGCCTTGCGGAAGTTTACTTTGCCAATGGATGTGATTTGCATATGACCATAGAGATGCTCACTCAGTTAGAGCTTCAAGTCGATGGTAGTTTCCATCAGAATCTGAGTTCTAAGACTCTGTCAGCTCCCAATCTCAGTGCAATGGATTTTCCTGCACTTACTTCACCAGATGGTCAGACAGCTTCTGTAAAATATTCTGTAGATAATGTCCAGCAAAGTGGCAACCCTTACCGATCATCAGACAAAGACATTCTGTCTTTCAAAACTAGCTCTTCAATTCCGACTAGAGGTGCTATTGACTTTGCTTCAGCTGTGAGGAAGCTGGCTTCTCAGGACTCTGGTATTTGGAAGTATGATAAAAGTGGTTCTGGTGATGCTGCCATTGGTTCAAGTAGGACATCTCATTTTTTGGCTGGCTACGATGGTGGACTGGGTAGAGCCAGCTTCAGTGATCGGTTACAGACTCGTGGTTCAGCTCGGGCAGCACCTGTTTGGGTTGATACTGGTGACACAGTTGCAAATATGTACTCGGAGCTGAGGGAGGAGGCTCGTGACCATGCACGCTTACGTAATGCATATTTTGAGCAGGCACGGCAAGCCTATCTTATTGGCAATAAAGCCCTAGCAAAGGAACTTAGTGCTAAAGGGCAAGTGCACAACATGCATATGAAAGCAGCTCATGGAAAAGCTCAGGAATCTATTTATCGCCAGAGGAATCCAGTTGCTCCAGAGATGCAGGGGAATGGAAGAGGGCACGAGAGGATGATCGACCTACATGGACTGCATGTGAGTGAAGCGATTCATGTGCTAAAACATGAGCTTAGTGTGCTGAAAAACACGGCCAGAGCTGCCGATCAGCCTCTGCAGGTCTATATTTGTGTGGGGACAGGTCATCATACAAGAGGTTCCCGCACTCCTGCAAGACTTCCGATAGCTGTACAGCGTTTTCTACTCGAAGAAGGTCTTGACTTCACAGAACCTCAGCCAGGCCTACTTCGTGTTGTCATATATGTTCCAATGATGCGATCCACTTCCATTCTCTTGCTCTCCAAACCTTCCCTTTTCCCTTCTTCCTTCTCATTTCCCACCACCTCCCTGTCTCAATGGTTTTCCCTTCTCCGCCACGCCATCGCCACCTCCGACCTCCTCCTCGGAAAACGTGGCCACGCCCTCATCATAACCTCCGGCCACCACCATGACCCTTTCCTTGTCAACAACCTCATCACCATGTACGGCAAATGCGGCTCCCTCTCCTGCGCTCGCCACCTGTTCGACGTAATTCCCCACAGAGACCTTGTCACCTGGAATGCCATTCTCTCTGCATACGCCCAAGCCGGTGATGCTGACATTGTCAATGCTCATGAGGGTTTTCGCCTTTTCCGTGTTCTCCGCGAGTCCTTTGTGTTAACCACTCGTCATACTCTGGCCCCTGTGTTCAAGTTATGCCTCCTTTCTGGGTGTGAATGGGCTTCTCAGGTGCTTCATGGCTATGCGGTTAAGATTGAGTTGGAATGGGATGTGTTTGTGGCTGGGGCATTGGTCAATATATATGCTAAATTTGGGAGGATCAGAGATGCCCGTGTTCTGTTTGATGGGATGCCCGTGAGGGATGTGGTCTTGTGGAACGTCATGATCAAGGCTTATGTTGAAATGGGTCTTCAGCATGAAGCTTTGTTTCTCTTCTCGGCGTTTCACAGGAGTGGCCTGTGTCCTGATGATGTTACTGTCCGGAGTGTTCTTATGGGTGTTAGTAGAACTGGTTTTGAATTGCAGTTGAAGCAGGTTCGAGCTTATGCTACAAAGTTGTTCCTTCTGGATCATGATTGGGAGGTTGTCATATGGAACAAGACACTTAGTGACTATCTTCAAGCTGGAGAGACTACGGAGGCTATTGAATGCTTCATGGATATGATCAAATTGCGGGTAGCATATGACAACATGACATTACTCGTGATGCTATCTGTGGTTGCAAGTGAAAAGAATATCAATATGGGAAAACAGATTCACGGTGTTGTTGTGAAAATGGAGTCTGATCGTGTTGTATCAGTTGCAAACAGTCTTCTTAATATGTACATGAAGGCAGGTTCTATCGATTATGCGAAAATCGTGTTTAGTCAAATGAAAGAAAAGGATTTAATATCATGGAACACAATTATATCTGGTTGTACGCGGGGTGGTTCAGTGGAGTTGTCCATAAGCTTCTTTGTTAATTTACTACGCAGTTGCCTATTGCCGGACCAATTCACAATTGCAAGTGTTTTGAGGGCTTGCTCTTCTCTTAAAGAAGGCGTCTATTTCAGTAGACAAATTCATACTTATGCAATAAAAGCTGGTATCATCTATGATTCGTTTGTTTCAACAGCTTTAATTGATGCCTATTCCAAGAGTGGAAAGATGGAAGAGGCAGAACTTCTTTTTAGAATCCATGATGGATTTGATTTGGCTTCTTGGAACGCTATGATGCATGGGTACATAGTGAGTAAGTGCTATCACAAAGCATTGGAGCTTTTCATTCAAATGCATGGAAGTGGTGAGCAGGGAGATCAGATTACTCTGGCAAATGCAGCTAAAGCCGCTGGATGCTTGGTGGGGCTTGAACAAGGGAAGCAGCTTCACGCCATTGCCATAAAAAGGATATTTAATTTAGATTTGTTTGTTATAAGCGGGATTCTGGACATGTATCTAAAATGTGGAGAGATGGAAAGCGCATGCAAAGTTTTCAGTAAGATCCCTTCACCTGATGATGTTGCATGGACAACTATGATATCGGGATGCGTGGATAATGGATATGAGGAGCATGCTCTTTTTACATATCATCAGATGAGACTTGCCGGTGTGCAACCTGACGAGTATACCTTTGCCACCCTTGTCAAGGCTAGCTCTCTTCTAACAGCATTGGAACAAGGGAGGCAGATTCATGCTAATGTTATCAAGTTGAACTGTGCTTTAGATCCTTTTGTTATGACCTCACTTGTTGACATGTATGCCAAGTGTGGGAACATAGAAGATGCCTATAGATTGTTCAAAAAAATGAACATGAAGAGCATCGCCTCGTGGAATGCTATGATAGTTGGATTAGCTCAACACGGAAATGCAAAGGAGGCCCTCAACCTTTTCAAAGATATGAAGTCTAAGGATGAAATGCCTGACAGAGTTACCTTTATAGGAGTCCTTTCTGCTTGTAGCCATTCTGGTTTGGTTTCTGAAGCATATGAAAATTTCTATTCTATGCAAAGAGACCACAGAATTGAACCCGAGATTGAGCATTATTCCTGTCTTGTTGATGCCCTTAGCCGTGCAGGGCGCATTAAGGAAGCTGAAAAGGTTATATCATCGATGCCCTTTGAAGCTTCTGCTTCAATGTACAGGACTCTCCTAAATGCTTGTAGGGTTCAGGGAGACAAGGTGAAGGGAAAACATGTTGCCGAGACGCTTTTGACCTTGGAGCCGTCTGATTCAGCAGCTTATGTTCTTTTATCCAATATATATAGAGCTGCTAATCAATGGGAAAGTGCAGTGAGTGCTAGAAATATGATGAGAAGGGTAAATGTAAAGAAGGATCCAGGCTTTAGTTGGATAGATATAAAGAACAAGGTTCATTTGTTTGTAGCAGGAGATAGATCACATGAAGAAGCTGATTTGATATACAATAAGGTGGATCATATTATGAAAAGGATTAAGGAAGAAGGATATGTCCCTGATACAGATTTTGCACTTGTTGATATTGAAGAAGAAGAAAAGGAGAGTGCTCTTTATTATCACAGTGAGAAGCTAGCAATAGCTTATGGTATCGTAAGAACACCACCATCCATCCCATTAAGGGTAATTAAGAACCTTAGGGTGTGTGGAGATTGCCATAATGCAATCAAATATATGTCAAAGGCTTTTCAACGAGAGATTGTTGTGAGAGATGCAAACCGATTTCATCATTTCAGGAGTGGAATCTGCTCTTGTGGTGATTATTGGTGA 4683 0.4378 MNLSKKVSQTDAKLSSPNKATTLNPNAAEFVPFSLRTSFSGTASSVDATARLANAGALGKAVLDRSESSISNNSDDEVHQYWRCQLPDDITPDFKVAGEDVSQDVNDLSLAGLSMHDDIEGLRFASSKGSRYILNEQEELSQQHINGNSFTDRLRFSNSSFREDPSSASFLNTSTNPWDRPIGNANQFVSSGQEGLTYDDNSRHGFFNDIFSENAIVNDTNLNPLEFLASLFPGFAAESLAEVYFANGCDLHMTIEMLTQLELQVDGSFHQNLSSKTLSAPNLSAMDFPALTSPDGQTASVKYSVDNVQQSGNPYRSSDKDILSFKTSSSIPTRGAIDFASAVRKLASQDSGIWKYDKSGSGDAAIGSSRTSHFLAGYDGGLGRASFSDRLQTRGSARAAPVWVDTGDTVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQVHNMHMKAAHGKAQESIYRQRNPVAPEMQGNGRGHERMIDLHGLHVSEAIHVLKHELSVLKNTARAADQPLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGLDFTEPQPGLLRVVIYVPMMRSTSILLLSKPSLFPSSFSFPTTSLSQWFSLLRHAIATSDLLLGKRGHALIITSGHHHDPFLVNNLITMYGKCGSLSCARHLFDVIPHRDLVTWNAILSAYAQAGDADIVNAHEGFRLFRVLRESFVLTTRHTLAPVFKLCLLSGCEWASQVLHGYAVKIELEWDVFVAGALVNIYAKFGRIRDARVLFDGMPVRDVVLWNVMIKAYVEMGLQHEALFLFSAFHRSGLCPDDVTVRSVLMGVSRTGFELQLKQVRAYATKLFLLDHDWEVVIWNKTLSDYLQAGETTEAIECFMDMIKLRVAYDNMTLLVMLSVVASEKNINMGKQIHGVVVKMESDRVVSVANSLLNMYMKAGSIDYAKIVFSQMKEKDLISWNTIISGCTRGGSVELSISFFVNLLRSCLLPDQFTIASVLRACSSLKEGVYFSRQIHTYAIKAGIIYDSFVSTALIDAYSKSGKMEEAELLFRIHDGFDLASWNAMMHGYIVSKCYHKALELFIQMHGSGEQGDQITLANAAKAAGCLVGLEQGKQLHAIAIKRIFNLDLFVISGILDMYLKCGEMESACKVFSKIPSPDDVAWTTMISGCVDNGYEEHALFTYHQMRLAGVQPDEYTFATLVKASSLLTALEQGRQIHANVIKLNCALDPFVMTSLVDMYAKCGNIEDAYRLFKKMNMKSIASWNAMIVGLAQHGNAKEALNLFKDMKSKDEMPDRVTFIGVLSACSHSGLVSEAYENFYSMQRDHRIEPEIEHYSCLVDALSRAGRIKEAEKVISSMPFEASASMYRTLLNACRVQGDKVKGKHVAETLLTLEPSDSAAYVLLSNIYRAANQWESAVSARNMMRRVNVKKDPGFSWIDIKNKVHLFVAGDRSHEEADLIYNKVDHIMKRIKEEGYVPDTDFALVDIEEEEKESALYYHSEKLAIAYGIVRTPPSIPLRVIKNLRVCGDCHNAIKYMSKAFQREIVVRDANRFHHFRSGICSCGDYW* 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g2138 1560 Pfam PPR repeat family 1151 1197 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat family 1253 1300 IPR002885 -
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 1005 1097 IPR011990 GO:0005515
Ahy20g2138 1560 SUPERFAMILY SMR domain-like 492 573 IPR036063 -
Ahy20g2138 1560 SMART SMR_2 491 575 IPR002625 -
Ahy20g2138 1560 SUPERFAMILY TPR-like 1229 1412 IPR011990 GO:0005515
Ahy20g2138 1560 Pfam DYW family of nucleic acid deaminases 1468 1560 IPR032867 GO:0008270
Ahy20g2138 1560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1051 1085 IPR002885 -
Ahy20g2138 1560 Gene3D - 461 575 IPR036063 -
Ahy20g2138 1560 Pfam PPR repeat 1327 1351 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 1025 1045 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 951 977 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 850 879 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 750 774 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 777 806 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 1054 1082 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 671 687 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 1226 1252 IPR002885 -
Ahy20g2138 1560 Pfam PPR repeat 923 949 IPR002885 -
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 1201 1315 IPR011990 GO:0005515
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 731 841 IPR011990 GO:0005515
Ahy20g2138 1560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1152 1186 IPR002885 -
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 1316 1385 IPR011990 GO:0005515
Ahy20g2138 1560 ProSiteProfiles Smr domain profile. 494 575 IPR002625 -
Ahy20g2138 1560 PANTHER - 622 825 - -
Ahy20g2138 1560 Pfam Domain of unknown function (DUF1771) 414 477 IPR013899 -
Ahy20g2138 1560 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 622 825 - -
Ahy20g2138 1560 Pfam E motif 1375 1432 IPR046848 -
Ahy20g2138 1560 MobiDBLite consensus disorder prediction 1 21 - -
Ahy20g2138 1560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 949 983 IPR002885 -
Ahy20g2138 1560 CDD CUE_CID7_like 222 264 IPR041806 -
Ahy20g2138 1560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1222 1252 IPR002885 -
Ahy20g2138 1560 TIGRFAM PPR: pentatricopeptide repeat domain 1227 1249 IPR002885 -
Ahy20g2138 1560 TIGRFAM PPR: pentatricopeptide repeat domain 1154 1188 IPR002885 -
Ahy20g2138 1560 TIGRFAM PPR: pentatricopeptide repeat domain 1328 1351 IPR002885 -
Ahy20g2138 1560 TIGRFAM PPR: pentatricopeptide repeat domain 951 984 IPR002885 -
Ahy20g2138 1560 TIGRFAM PPR: pentatricopeptide repeat domain 1054 1084 IPR002885 -
Ahy20g2138 1560 TIGRFAM PPR: pentatricopeptide repeat domain 1256 1288 IPR002885 -
Ahy20g2138 1560 PANTHER - 804 1553 - -
Ahy20g2138 1560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Ahy20g2138 1560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1253 1287 IPR002885 -
Ahy20g2138 1560 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 804 1553 - -
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 602 730 IPR011990 GO:0005515
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 1098 1200 IPR011990 GO:0005515
Ahy20g2138 1560 Gene3D Tetratricopeptide repeat domain 848 1004 IPR011990 GO:0005515
Ahy20g2138 1560 SMART DUF1771_2 413 478 IPR013899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g2138 Ahy-Chr20 119380294 119388765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g2138 809 1560 Glycoside Hydrolase AT3G49170 36.078 8.13e-159 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g2138 - - gsj:114408324 2332.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2138 20 119380294 119388765 Ahy20g2138 20 119380294 119388765 ECH
Ahy20g2138 20 119380294 119388765 Ahy10g1702 10 97233506 97241863 hybridization