Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy20g2115 | ATGAATGAGACATTGAATGTGGCAGCACAAATGGGAGACATAGACTTGCTCTACAAGCTTCTTCAGGTGGATCCATATCTCTTGGACCGCATTGCTTCCGTACCATTCATCAATACACCTCTGCATTTTGCAGCCTCCGCGGGTCAAACCAGTTTTGCCACTGAGATCATGAGACTGAAGCCTATCTTTGCATGGAAGCTGAACCTGTATGGGTTTAGCCCCGTGCACCTTGCATTACAGAACGGAAACTACAGAACGGTGTGCAGATTTATAGACATCAACAAAGACCTTGTCCGGGTCAAGGGAAGAGAGGGACTCACACCTTTGCATTTAGCGACTAAGATTGGGCAAACCGATCTTGTAGCGAGATTCTTGTCGGCTTGCTCAGGTTCCATTGAAGATGTGAATGTGGGGAGTGAGACTGCTTTGCATATGGCGGTTAAATATAAGCAGCTTGAGGCTCTTGAGGTTCTGGTCGGCTGGGTTCGTAGGAGTTGCCACAAGTGTGCTCACGCAACAGAGAAACGGGTACTTAATTGGGCGGACGATAAAGGCAACACCGTTCTCCACCTTGCACTTCTCAAAGCCTTACCACCACAGACGGTTAGATTGTTGATAGACAGCAACATTGACTTAAACATCAAGAATTTAGAGGGCTCAACAGCTTTAGACATTGTGGAGAACAATCAAAGGCAACAAGTTAACACTGCAGATATCACTCAGATCAGGGACATGTTAGTTAGAGGGGGAGCTTTACGCGCCACCTCACTCGCCATCACACCCCTGGAAGAAGACCTAAGATCAAGAATCACTTTCCACGAGAGAGTAGCAATCTACATCACGCGCCTCAGAAGGCGAATCTCAAACGACACGCGCAACGCCCTCTTAGTAGTGGCGATACTCTTCGCAACAAGCACCTACGAAGCCGCAATTAACCCCCCCGGCGGAGTGTACCAGGCGGAGGCCAAATCTCCACCATCTCCACCACCACCTTCGAGCAAGTTCAGCATCCCTTTCAGGCTTAACCATCATCATCATAATAACAATGTTGGTGCTGGGAAAGCGGTGATGAGGGTTCAAGATTTCATTTGGTTCTGGTCATTTAACACGTGCGCTTTTTATCTATCGATTTTGATGATATGTTTGTTAATGCCGAGAGGGCGTGTTAGTGTTATAGTGGCTTCTCCGCTGTTTCTATTCTGTGGTTGCTATATGTTCTCCATGCTCGTTATTTCGCCAAGCTGTAAATTGGGCATAGCAGCTGTGGCTCTACCATGCATTCTTTTGGTTTTGAACTTTTGGGGAGGTTCGGTATACATTCGATTATCCAAAAAGCTCAAAAGATATCGTTCTAAACAGGAAGATGGATCTAGATTCTCAGGAGGAAACAAATGGTGA | 1398 | 0.4664 | MNETLNVAAQMGDIDLLYKLLQVDPYLLDRIASVPFINTPLHFAASAGQTSFATEIMRLKPIFAWKLNLYGFSPVHLALQNGNYRTVCRFIDINKDLVRVKGREGLTPLHLATKIGQTDLVARFLSACSGSIEDVNVGSETALHMAVKYKQLEALEVLVGWVRRSCHKCAHATEKRVLNWADDKGNTVLHLALLKALPPQTVRLLIDSNIDLNIKNLEGSTALDIVENNQRQQVNTADITQIRDMLVRGGALRATSLAITPLEEDLRSRITFHERVAIYITRLRRRISNDTRNALLVVAILFATSTYEAAINPPGGVYQAEAKSPPSPPPPSSKFSIPFRLNHHHHNNNVGAGKAVMRVQDFIWFWSFNTCAFYLSILMICLLMPRGRVSVIVASPLFLFCGCYMFSMLVISPSCKLGIAAVALPCILLVLNFWGGSVYIRLSKKLKRYRSKQEDGSRFSGGNKW* | 466 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy20g2115 | 465 | ProSiteProfiles | Ankyrin repeat profile. | 184 | 217 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | SMART | ANK_2a | 36 | 65 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | SMART | ANK_2a | 104 | 134 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | SMART | ANK_2a | 138 | 168 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | SMART | ANK_2a | 184 | 214 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | SMART | ANK_2a | 70 | 99 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | ProSiteProfiles | Ankyrin repeat region circular profile. | 104 | 125 | - | - | |
| Ahy20g2115 | 465 | Pfam | Ankyrin repeats (3 copies) | 99 | 159 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | ProSiteProfiles | Ankyrin repeat region circular profile. | 184 | 216 | - | - | |
| Ahy20g2115 | 465 | SUPERFAMILY | Ankyrin repeat | 4 | 232 | IPR036770 | - | |
| Ahy20g2115 | 465 | PANTHER | ANKYRIN REPEAT PROTEIN | 10 | 430 | - | - | |
| Ahy20g2115 | 465 | Pfam | Domain of unknown function | 289 | 388 | IPR026961 | - | |
| Ahy20g2115 | 465 | Gene3D | - | 1 | 239 | IPR036770 | - | |
| Ahy20g2115 | 465 | ProSiteProfiles | Ankyrin repeat profile. | 104 | 137 | IPR002110 | GO:0005515 | |
| Ahy20g2115 | 465 | PANTHER | HOMEOBOX PROTEIN WARIAI | 10 | 430 | - | - | |
| Ahy20g2115 | 465 | Pfam | Ankyrin repeat | 185 | 216 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy20g2115 | Ahy-Chr20 | 118360516 | 118362953 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy20g2115 | 1 | 322 | Miscellaneous Gene Families | AT4G10720 | 45.062 | 9.98e-87 | 270 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy20g2115 | - | - | aip:107621997 | 898.656 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Ahy20g2115 | 20 | 118360516 | 118362953 | Ahy10g1679 | 10 | 96209673 | 96212224 | hybridization |