Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1995 ATGAATCTTCGAATTGAAAACACAAACACCATCGATTTGCTTCAGCTTTCTAAACCTTTCTTCCCTCCTAAAACCCTTTTCTCCCATTCCTTACCTCAACGCCTTCTTCTCAGAACTAGATTACGCCGTAAACACTCTTCCATCACTCTCCGCAACCTCACTGTAACTGCTTCTAATGCTCCCAATCCTCTTTCAAACTCAGCAACTCTCACCCAACAAGAGCAACAAGAAGAAGAAGAAGAAGAAGATGCTGAGTCTGCTCAGCTATTCGAGAGACTGAAAGAGGCCGAAAGGAAACGGGTGAATGAAATGGAAGAGTTTGAGAAGAAGGCAAATATGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCCGAGCTTTGCTGACCTTGCGCGGAAAGCTGAAGGGAACTGAGTGGGATCCTGAAAACTCACACAGGATAGACTTCAGCGAGTTTATGAGACTTCTTGACTCTAATAATGTCCAGTTTATGGAGTACTCCAATTATGGCCAAACAATATCAGTGATTCTACCATACTACAAAAATGGGAAAACACCAGGGACTGAAGGTAATCCTAAGGATATTGTTTTCCGCCGGCATGTGGTGGATCGAATGCCAATTGATTGTTGGAATGATGTTTGGAGAAAACTGCATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATACAGTACCTTTTGAAGTTTACACAACTGTCGCAACTGCAGTCATATGGTCTATGCGTCTTGCTGTGGCTGTTGGGTTTTACGTGTGGATTGATAATTTGATGAGACCAATATATTCAAAGTTGATTCCTTGTGATTTAGGATCTCCTACCCAGCAAACTAAGCAGCCACTCAAACGCCAAGCACTTGGATCGCTGGGCAAAAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTCACTTTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAATTGCAAGAGATTGTACGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTGCTTCTCCACGGACCTCCAGGAACGGGTAAAACTCTACTGGCTAAAGCCATCGCTGGGGAAGCAGGGTTGCCTTTTTTTGCGGCAAATGGCACAGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCACGTGTTAAGGATCTTTTTGCTAGTGCAAGATCATTTTCACCTTCTATCATATTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGACATTGGTGGAGGAGGTGCTGAACGGGAACAAGGCTTACTTCAGATACTTACTGAGTTGGATGGATTCAAAGTTTCTACAGCACAGGTGCTTGTGATCGGTGCTACAAATAGATTAGACATTCTTGATCCCGCTTTGTTGAGGAAGGGTCGTTTTGACAAGATCATTCGAGTTGGTTTGCCATCAAAGGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTCTTTCGCTCAGAGGAGGAAAAGGAGATTCTTCTTAGGGAAATTGCAGAGCTTACAGAAGATTTTACTGGAGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGATTACATTGGGCGAGATGAGCTACTTGAGGCATTAAAGAGGCAAAAAGGAACTTTTGAAACAGGGCAAGAGGATAGTGCTGAAATTCCTGAAGAATTGAAGCTTAGACTGGCATACAGAGAAGCGGCAGTTGCTATTCTTGCATGTTATTATCCTGAACCACACCGCCCTTTTGATGAGACTAATATAAACTCAATCCAGAGCCGGCCAAATATGAGTTATTCTGAGACTGCTGGCCAAGTTTTTGCGAGGAAGTCAGATTATGTAAATTCTATTATCCGTGCATGTGCTCCAAGAATAATTGAGGAGGAGATGTTTGGAATTGACAACTTATGTTGGATCTCTGCAAAGTCAACGTTAGAAGCTTCAAGGCGTGCTGAGTTTTTAATTTTACAGACAGGAATGACAGCATTTGGGAAAGCATACTTCAAAAACGAAAGTGATCTTGTACCTAATCTTGCAATGAAGCTTGAAGCGCTCCGAGATGAGTATATGCGTTATGCTACAGAAAGGTGTTCATCCGTGCTCAGAGAATACCAGGAAGCAGTTGAGACAATCACAGATGTTTTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATATGGGACATTTATAAGAGTGCTCCTCGTCGAACTCAGCCTCCTGTGAGTCCAGTTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGCCTTCCGGGAAGAGTTACATTCGCACCTGGCAATGCCGGGTTTGCGACCTTTGGAGCTCCTCGCCCAACCGAGACACAAATTGTGAGCGACGAAACTTGGAAGCTAGTAGATGGTATATGGGACAAAAAGATTCAAGATATTAGAGATGAATCTACAAGGGTGATCGAAGAAGAGAAAGAAAGGCCACAACTTTTGATGGCAAGCCATTTCCTTTGA 2568 0.4272 MNLRIENTNTIDLLQLSKPFFPPKTLFSHSLPQRLLLRTRLRRKHSSITLRNLTVTASNAPNPLSNSATLTQQEQQEEEEEEDAESAQLFERLKEAERKRVNEMEEFEKKANMQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDFSEFMRLLDSNNVQFMEYSNYGQTISVILPYYKNGKTPGTEGNPKDIVFRRHVVDRMPIDCWNDVWRKLHQQIVNVDVINVDTVPFEVYTTVATAVIWSMRLAVAVGFYVWIDNLMRPIYSKLIPCDLGSPTQQTKQPLKRQALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTELDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRFAILKVHARNKFFRSEEEKEILLREIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSAEIPEELKLRLAYREAAVAILACYYPEPHRPFDETNINSIQSRPNMSYSETAGQVFARKSDYVNSIIRACAPRIIEEEMFGIDNLCWISAKSTLEASRRAEFLILQTGMTAFGKAYFKNESDLVPNLAMKLEALRDEYMRYATERCSSVLREYQEAVETITDVLLEKGQIKAEEIWDIYKSAPRRTQPPVSPVDEYGALIYAGRWGIHGISLPGRVTFAPGNAGFATFGAPRPTETQIVSDETWKLVDGIWDKKIQDIRDESTRVIEEEKERPQLLMASHFL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1995 855 Coils Coil 67 113 - -
Ahy20g1995 855 Gene3D - 488 568 - -
Ahy20g1995 855 PANTHER METALLOPROTEASE M41 FTSH 57 824 - -
Ahy20g1995 855 Pfam AAA+ lid domain 516 556 IPR041569 -
Ahy20g1995 855 CDD AAA 319 487 - -
Ahy20g1995 855 Gene3D - 296 486 IPR027417 -
Ahy20g1995 855 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 57 824 - -
Ahy20g1995 855 Gene3D Peptidase M41 570 759 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ahy20g1995 855 ProSitePatterns AAA-protein family signature. 457 475 IPR003960 GO:0005524|GO:0016887
Ahy20g1995 855 Coils Coil 505 532 - -
Ahy20g1995 855 MobiDBLite consensus disorder prediction 57 87 - -
Ahy20g1995 855 SUPERFAMILY FtsH protease domain-like 577 759 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ahy20g1995 855 MobiDBLite consensus disorder prediction 57 73 - -
Ahy20g1995 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 561 IPR027417 -
Ahy20g1995 855 Pfam ATPase family associated with various cellular activities (AAA) 352 486 IPR003959 GO:0005524|GO:0016887
Ahy20g1995 855 SMART AAA_5 348 489 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1995 Ahy-Chr20 113142034 113147835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1995 269 596 Miscellaneous Gene Families AT3G47060 43.902 1.04e-67 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1995 - - ahf:112783256 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1995 20 113142034 113147835 Ahy20g1995 20 113142034 113147835 ECH
Ahy20g1995 20 113142034 113147835 Ahy10g1560 10 90910901 90916751 hybridization