Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1925 ATGGCTCAAACAAAACGCATGCTATGGGCGTCTTGTTTGATCTTTGTCTTAGTTCAATGCCATCTACCAAGTGCAAAATGCTCACATGCTTTGTCAAATGTTGGCATAAACTGGGGTGCATTGACATCTCACCCTATAAATCCTTATACTGTTGTTGATCTCTTGAAGGACAACGGAATCAAGAAAGTTAAATTGTTCGATGTAGATTCCTGGACACTTGGTGCTCTTGCTGGTTCAGGCATTGAAGTCATGATTGGCATCCCTAATGACCAAATGGAAAGACTTTCTAACAGTGGCCAGGCTGAGCAATGGGTCAAGCAAAATCTCACCAAACATCTACATGGTGGTGTCGACATCAGATACATATCTGTTGGAAACGAGCCTTTCTTGGCGAGCTATGAAAACAAGTATAGAAGTTCTACATTTCCAGCAATGAAGAGTATCCAGAAAGCTGTTGAGAAGGCAGGAGTTGCAGAGCAAGTTAAGGTTACTTCGTGTTTGAATGCAGATGTGTTGGATTCAGGTTCGGACAAGCCCTCGGACGGACAGTTTCGAAGTGACATCAAAGATGTCATGAAAGAAATACTCCAATTCCTTAACGACAATAACTCACCCTTCTTCATCAACATATACCCTTACCTTAGCCTTTATTTGAATCCAAATTTTCCAGAGGAACTGGCATTCTTTGACGCTGGTAGATCATTTGAAGACAAGGGTGCAACTTACACAAATGTGTTTGATGCAAGTGTAGATACCCTTGTTTGGGCACTAAAGAAGGAGGGCTACTCCGACATGAAAATCGTTGTTGGCGAAGTTGGATGGCCGACGGACGGCCACAAAAGCGCCAACAAAGATAAAGCAAGAAGATTCTACCATGGATTCCTTAAGAAACTAGGAAACCAACAAGGAAGCCCTCTTCATCCTGGAGTCTTGGATGTGTATCTCTTTGGTCTTTTCGATGAGAATCTCAAGAACATTGAACCCGGGAAATTTGAGCGTCATTGGGGAATTTTCGAATACGATGGGAAGCCCAAGTTCCCTGTAGATTTTTCTGGTAAAGGAGAAGATCACAAATGGCCAGTGGGAGCAAAAGGGGTTAGATACTTAGAGAAGCAATGGTGTGTGTTAAGCGAAGATGTTAAAGACTTCAGTGGTCCTGTTTATGAGGCATTAGGGTATGCATGTGCAAATACTGATTGTACAAGCTTAGGATATGGTTGTTCTTGTGCCGATTTGGATATTCGTGGCAATGTTTCTTATGCTTTTAATCAATACTTTCAAGCAAGGGATCAAAGCGTTGAGGCATGCGATTTCGATGGACTGGCGGAAATTGTAACAAGTGATCCATCAAAAGGGACTTGTAAGTTCCCGATAGTCATTGAGAGTGCTGCAACTTCTCTTAAGACACGTGATGCAATAATCCATATCCTTCTTCTTGGCTTCGCTCTATTTTTTGTGACGTTTATGTGA 1470 0.4218 MAQTKRMLWASCLIFVLVQCHLPSAKCSHALSNVGINWGALTSHPINPYTVVDLLKDNGIKKVKLFDVDSWTLGALAGSGIEVMIGIPNDQMERLSNSGQAEQWVKQNLTKHLHGGVDIRYISVGNEPFLASYENKYRSSTFPAMKSIQKAVEKAGVAEQVKVTSCLNADVLDSGSDKPSDGQFRSDIKDVMKEILQFLNDNNSPFFINIYPYLSLYLNPNFPEELAFFDAGRSFEDKGATYTNVFDASVDTLVWALKKEGYSDMKIVVGEVGWPTDGHKSANKDKARRFYHGFLKKLGNQQGSPLHPGVLDVYLFGLFDENLKNIEPGKFERHWGIFEYDGKPKFPVDFSGKGEDHKWPVGAKGVRYLEKQWCVLSEDVKDFSGPVYEALGYACANTDCTSLGYGCSCADLDIRGNVSYAFNQYFQARDQSVEACDFDGLAEIVTSDPSKGTCKFPIVIESAATSLKTRDAIIHILLLGFALFFVTFM* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1925 489 Gene3D Glycosidases 32 358 - -
Ahy20g1925 489 Pfam Glycosyl hydrolases family 17 34 350 IPR000490 GO:0004553|GO:0005975
Ahy20g1925 489 Gene3D - 368 469 - -
Ahy20g1925 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 4 476 IPR044965 GO:0004553|GO:0005975
Ahy20g1925 489 SMART X8_cls 372 456 IPR012946 -
Ahy20g1925 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 4 476 - -
Ahy20g1925 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
Ahy20g1925 489 Pfam X8 domain 372 442 IPR012946 -
Ahy20g1925 489 SUPERFAMILY (Trans)glycosidases 34 350 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1925 Ahy-Chr20 107503130 107505038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1925 35 468 Miscellaneous Gene Families AT5G64790 53.547 4.38e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1925 - - gmx:100794658 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1925 20 107503130 107505038 Ahy10g1505 10 86196389 86198284 hybridization
Ahy16g2919 16 143494089 143497413 Ahy20g1925 20 107503130 107505038 PCT