Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1473 ATGGCTGATAGTTTGGTCAGATCCGGAGCGAGACCCAAGACCTGCCACATCGACGCTGCCATGGAATGCGTCATTCGCTACATCGACGACCCCAAAGACCGCAGCGCCGTCTCCCTTGTCTGCCGTCGATGGCACAAGCTCGATTCCCTCACACGCAAGCACGTCACCGTCGCCTTCTGCTACACCACCACTCCGGAGCGCCTTAGGGGGCGGTTCCCGCGGCTGGAGTCCCTGAAGCTGAAGGGGAAGCCGAGGGCGGCGATGTTCAACCTCATACCGGAGGATTGGGGTGGTCACGTGACACCTTGGGTGAGGGAAATCTCGGAGGGTTTCGAGTTTCTGAAGAGCGTTCATTTCCGGCGAATGATTGTTAGGGATTCGGATCTTGAGCTTCTTGCGAGGTCACGTGGTCACGTGCTTGAGGCTTTGAAGCTTGATAAGTGTTCTGGTTTCTCCACTGATGGCCTTCTCTTTGTTACTAGGTTTTGCAGGAATTTAAGAGTCTTGTTTTTGGAGGAAAGCACAATTGTTGAGAAAGATTGTGAATGGCTGCATGAGCTTGCTTTGAACAATACTGTACTTGAGACGCTGAATTTTTACTTGACAGACATTGCTGCTGTCAAATTTCAGGACCTGGAACTTATAGCCAAAAATTGTCCTAACTTAGTCTCTGTGAAAATTACTGATTCTGAAGTCTTGGATCTTGTGAACTTCTTTTGCTATGCCTCTGCTCTAGAAGAATTTAGTGGAGGTTCCTACAACTGCGAACCGGATAAGTACAATGCTGTTGTGTTACCAGAAAAATTACACCGATTGGGTTTGACATATATCGGAGGGAATGAGTTGCCGGTGGTGTTCAGTTGTGCATCTGGGCTTACAAAATTGGATCTGCTTTATTCATTTTTGGATTCCGAGGATCATTGTATGTTAATCGAGAGGTGCCCCAATTTGGAGGTCCTTGAGTCGAGGAATGTGATTGGAGATAGAGGATTGGAAGTTCTTGCTCGCTGTTGTAAGAGGTTTAAAAGGCTTAGGATTGAACGAGACAGTGATGAAGTTGGTACTAGTGTTACCCATAAAGGATTAATTGCTTTGTCACAGGGATGTCCAGAACTAGAATATTTGGCTGTTTATGTATCTGACATGACGAATGCCTGTCTCGAACACATCGGTACTCACTGCAAAAATCTCTATGATTTTCGGCTTGTCTTGCTTGATCACCGTGAAAAAATAACTGATTTGCCACTTGACAATGGAGTAAGGGCTTTACTCATGGGTTGCGACAAGCTTATAAGATTTGCACTATATCTGCGTCCTGGGGGCTTGACCGACAAGGGTCTTGGCTATATTGGGAAATACAGCCAAAATGTTAGGTGGATGCTGCTTGGTTACCTTGGGGAGTCTGATGCAGGGCTTTTGGAATTCTCTAAGGGATGTCCTAATCTTCAGAAACTTGAAATGAGAGGTTGTTATCATTTCAGCGAGCGTGCACTAGCTGCTGCTGCGACGCAACTGGCTTCGCTTAGGTACTTGTGGGTGCAAGGATGTGGGCAATCTACTTCCAGAGGTGATCTTGTGGCTATGGCTCGCCCCTTTTGGAATATTGAGTTGATTCCTTCGAGGCGTGTGATCGCCAATGATGAATCTCGAGGCCCTGTAGCTGTTGAGCATCCGGCACACATTCTTGCATATTTCTCTCTTGCAGGACAGAGATCTGATTTTCCAGATTCTGTTGTACCTCTGGATTCTACCACACGTGTATAA 1764 0.4688 MADSLVRSGARPKTCHIDAAMECVIRYIDDPKDRSAVSLVCRRWHKLDSLTRKHVTVAFCYTTTPERLRGRFPRLESLKLKGKPRAAMFNLIPEDWGGHVTPWVREISEGFEFLKSVHFRRMIVRDSDLELLARSRGHVLEALKLDKCSGFSTDGLLFVTRFCRNLRVLFLEESTIVEKDCEWLHELALNNTVLETLNFYLTDIAAVKFQDLELIAKNCPNLVSVKITDSEVLDLVNFFCYASALEEFSGGSYNCEPDKYNAVVLPEKLHRLGLTYIGGNELPVVFSCASGLTKLDLLYSFLDSEDHCMLIERCPNLEVLESRNVIGDRGLEVLARCCKRFKRLRIERDSDEVGTSVTHKGLIALSQGCPELEYLAVYVSDMTNACLEHIGTHCKNLYDFRLVLLDHREKITDLPLDNGVRALLMGCDKLIRFALYLRPGGLTDKGLGYIGKYSQNVRWMLLGYLGESDAGLLEFSKGCPNLQKLEMRGCYHFSERALAAAATQLASLRYLWVQGCGQSTSRGDLVAMARPFWNIELIPSRRVIANDESRGPVAVEHPAHILAYFSLAGQRSDFPDSVVPLDSTTRV* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1473 587 Pfam F-box 17 54 IPR041567 -
Ahy20g1473 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 16 583 - -
Ahy20g1473 587 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 16 583 - -
Ahy20g1473 587 Gene3D - 7 52 - -
Ahy20g1473 587 Gene3D Ribonuclease Inhibitor 53 585 IPR032675 -
Ahy20g1473 587 Pfam Transport inhibitor response 1 protein domain 73 119 IPR041101 -
Ahy20g1473 587 SUPERFAMILY RNI-like 91 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1473 Ahy-Chr20 41331368 41335019 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1473 K13463 - gmx:732662 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1473 20 41331368 41335019 Ahy10g1083 10 27329978 27333603 hybridization
Ahy20g1473 20 41331368 41335019 Ahy17g0989 17 12443607 12448370 PCT
Ahy20g1473 20 41331368 41335019 Ahy7g0814 7 10402271 10407037 PCT
Ahy17g0989 17 12443607 12448370 Ahy20g1473 20 41331368 41335019 PCT
Ahy7g0814 7 10402271 10407037 Ahy20g1473 20 41331368 41335019 PCT