Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1367 ATGGAAACCACCGAACAGCCAAACCCTAACAACCACCCCTCCCCCAATGCCGACCCCGAACAACAACAAAGCCACTTCACCGACGGAGACGACGACGAAGAAGAATTTGAAGAAGAAGAAGAGGAAGAAGACGGAGACGACGTCGTTTCGCGTGACTCCCAGTCCCCAGTGTCGCAGCTTCGCGAGCAGCGCTTCAAGATGGAGACGCTCTCGCGGCGGCTGTCATCGGAGCTTGTACCAATCAGAGTCCACGACATTGTGATCCGTGGCAACGCGAAGACGAAGGATTGGGTGATCCAAGCGGAGCTCGAGGGGATCGAGAACGCCGCCACCGTGCAGGACCTGATTCGCGCCTCGCAGGTCGCACTTGCAAGGCTCCAGGGGCTCGGAATCTTCGATTCCACCAACCTCCGCCTTGAGCCTGGGCCGCCGGAGCTCCCTCACACAGCCAACATCGTCGTTGATGTCGTCGAAGCCGCCAGCAAAGTCAGTGGAGAATTCGGCGTTTACACCAAACCCTCGACTAGTTCCTGGACTAGTGAAGGTACTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCTTCTGTGGCCTACGGTGCTAACCAAACAACGGAGGTGAGTATAGGGGTCTATGCCCCTAGACTTAAAGGATTGTTAACTCCTCTTGTAGCACGACTATCCTTGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATATCAACACGGCACCATGACTTAGTGTACACTCTTGGATGGCGTACCTTAACAGATCCGTCACAAATGTCATCCAGGTCTATAAGGAGACAACTTGGCCATGGTTTGCTGTCATCTCTGAAGTATACATTTAAATTTGACAGGAGAAATTCACCAATCAGGCCTACCAGAGGATATGCTTTTCTTTCTACCACTCACTTTGGTGGCCTCACACCAGATGAACGAAGCTTGCGGTATATTCGTCAGGAGTTCGATGTTCGTTGTGCAGTCCCCTTTGGGTTTTATAATACAGCACTGAATCTTGGCATTTCTGCCGGTGCTGTTTTTCCATGGGGGCCTGGTTTCTTGAACAAGCCATCTCCCCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTTGGAGGGCCAGTAACATTGTGGGGATTCAAAACTCGGGGATTAGGTCCTACTGAACCAAGAAGGCAAAGCAGAGATGGGGTCGGCGATGACAATGATGATTCATCTAGATGGGACTTCGTTGGAGGGGATCTTGCTGTTAGTGCTTTTGCAGACCTATCTTTTGATCTTCCAATCAAGTGGTTGAGAGAACACGGAATCCATGGTCATGTGTTTGCTGGTGCTGGGAATATTACAAAATTAACTCAGAACGAATATAAGCTGTTCTCTCCTCGCAAGTTCTTAGAATCCTTTCGGACATCAGTGGGCTGTGGATTTGTTATTCCTACTAGACTTTTCCGCTTAGAGGGTAACTTCTACCATATTCTCCGGCAGGATGAGCATGATCGTGGAAAAACTGGATTTAGATTCAGTTTTTCGTCTCCTTCGTAG 1605 0.491 METTEQPNPNNHPSPNADPEQQQSHFTDGDDDEEEFEEEEEEEDGDDVVSRDSQSPVSQLREQRFKMETLSRRLSSELVPIRVHDIVIRGNAKTKDWVIQAELEGIENAATVQDLIRASQVALARLQGLGIFDSTNLRLEPGPPELPHTANIVVDVVEAASKVSGEFGVYTKPSTSSWTSEGTLKYKNLLGYGDLWDASVAYGANQTTEVSIGVYAPRLKGLLTPLVARLSLLSQDWQEFSSYKEQLLGMSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKFDRRNSPIRPTRGYAFLSTTHFGGLTPDERSLRYIRQEFDVRCAVPFGFYNTALNLGISAGAVFPWGPGFLNKPSPLPERFYLGGDFSPVCTLGGPVTLWGFKTRGLGPTEPRRQSRDGVGDDNDDSSRWDFVGGDLAVSAFADLSFDLPIKWLREHGIHGHVFAGAGNITKLTQNEYKLFSPRKFLESFRTSVGCGFVIPTRLFRLEGNFYHILRQDEHDRGKTGFRFSFSSPS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1367 534 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 8 532 IPR039910 -
Ahy20g1367 534 Pfam Omp85 superfamily domain 188 531 IPR000184 GO:0019867
Ahy20g1367 534 MobiDBLite consensus disorder prediction 407 426 - -
Ahy20g1367 534 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 171 532 - -
Ahy20g1367 534 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 8 532 - -
Ahy20g1367 534 Gene3D membrane protein fhac 80 159 - -
Ahy20g1367 534 Pfam Surface antigen variable number repeat 81 158 IPR010827 GO:0019867
Ahy20g1367 534 MobiDBLite consensus disorder prediction 27 48 - -
Ahy20g1367 534 MobiDBLite consensus disorder prediction 1 23 - -
Ahy20g1367 534 MobiDBLite consensus disorder prediction 1 61 - -
Ahy20g1367 534 MobiDBLite consensus disorder prediction 409 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1367 Ahy-Chr20 30195643 30201936 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1367 K07277 - gmx:100785408 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1367 20 30195643 30201936 Ahy20g1367 20 30195643 30201936 ECH
Ahy20g1367 20 30195643 30201936 Ahy17g0890 17 10330980 10334784 PCT
Ahy20g1367 20 30195643 30201936 Ahy7g0714 7 8133958 8137939 PCT
Ahy17g0890 17 10330980 10334784 Ahy20g1367 20 30195643 30201936 PCT
Ahy7g0714 7 8133958 8137939 Ahy20g1367 20 30195643 30201936 PCT