Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1229 ATGATGGATCCCCGCGAAGACCTCAACAAACCGGTAGTACTCATCACGGGGTGCTCCGAGGGAGGCATAGGCCACGCGCTTGCACGCGCCTTCGCAGCCAACAAGTGCGCTGTCGTCGCCACCAGCAGGTCGCGCTCCACCATGGCGGACCTTGAGCACGACACCCGCTTCTTCCTTCAGGAGCTCGACGTCAAGTCCGACGACAGCGTTCGCCGTGCTCTCGACGCCGTCATTGCCCACTTCGGCCGTGTCGACGTTCTTGTCAACAATGCCGGCGTTCAGTGTGTGGGCCCTCTTCCCGAGGTTCCTCTCTCTGCGATTCAGAGCACCTACGAAACCAACGTCTTTGGTGCCTTGAGGATGATTCAGGCTGTTGTTCCTCATATGGCAAAGCGGAAACAGGGTAAGATTGTGAATGTTGGAAGCGTTACGGCTATGGCATCTGGACCTTGGTCTGGCGCATATACTTCGTCCAAAGCTGCCCTTCATTCTTTGACAGATACCTTAAGATTGGAACTTAGCCATTTTGGAATTGATGTTGTCAATGTTGTCCCTGGAGCTATCAAGTCAAATATTGGAAATTCCGCCATAGCTAGCTACGACCACATGCCTGAGTGGGACTTATTCAAGCCTTTTGAAGCCGCAATTCGAGATAGAGCTTATTTTTCTCAGAAAACAAAGTCAACCCCCAATGATGAGTTTGCGAAACACACTGTGGCCGCTATCCTGAAGAAGAAGCCACCAGCGTGGTTCTCCTACGGCCATTACTCTACCGCAATGGCCATCATGTACCATTTGCCGCTGTGTGTTAGGGACTTTATTTTGAAGAAAGCGATGAAATGCTGA 846 0.5189 MMDPREDLNKPVVLITGCSEGGIGHALARAFAANKCAVVATSRSRSTMADLEHDTRFFLQELDVKSDDSVRRALDAVIAHFGRVDVLVNNAGVQCVGPLPEVPLSAIQSTYETNVFGALRMIQAVVPHMAKRKQGKIVNVGSVTAMASGPWSGAYTSSKAALHSLTDTLRLELSHFGIDVVNVVPGAIKSNIGNSAIASYDHMPEWDLFKPFEAAIRDRAYFSQKTKSTPNDEFAKHTVAAILKKKPPAWFSYGHYSTAMAIMYHLPLCVRDFILKKAMKC* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1229 281 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 142 170 IPR020904 GO:0016491
Ahy20g1229 281 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 271 IPR036291 -
Ahy20g1229 281 Gene3D - 10 269 - -
Ahy20g1229 281 CDD 17beta-HSD-like_SDR_c 12 257 - -
Ahy20g1229 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 IPR002347 -
Ahy20g1229 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Ahy20g1229 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 IPR002347 -
Ahy20g1229 281 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 9 279 - -
Ahy20g1229 281 PANTHER BNAC02G00550D PROTEIN 9 279 - -
Ahy20g1229 281 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 184 - -
Ahy20g1229 281 PRINTS Glucose/ribitol dehydrogenase family signature 13 30 IPR002347 -
Ahy20g1229 281 PRINTS Glucose/ribitol dehydrogenase family signature 129 145 IPR002347 -
Ahy20g1229 281 PRINTS Glucose/ribitol dehydrogenase family signature 176 193 IPR002347 -
Ahy20g1229 281 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Ahy20g1229 281 PRINTS Glucose/ribitol dehydrogenase family signature 155 174 IPR002347 -
Ahy20g1229 281 Pfam short chain dehydrogenase 12 195 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1229 Ahy-Chr20 23129342 23133851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g1229 2 192 Acyl Lipid Metabolism Gene Families AT1G62610 29.902 4.91e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1229 - - gmx:100789660 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1229 20 23129342 23133851 Ahy10g0906 10 15167086 15169768 hybridization