Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g1226 ATGTCGTCGTCGAAGTACCCCATACTTGACAACCGGCCGATTCATCAGTGGAAGGTTACAGAACTGAAAGAGGAGCTGAAGAGGAGGAGATTAACCACCAAGGGTTTGAAGGACGAGTTGGTGAGGCGATTGGATGAAGCTCTTCGTGCTGAGATGGAGGCTGATGAGTCTGCCTCGAAGGATGATGCAAACGGTTTTGAGGTCCATGCGGGTGGTGGCAGTGAAGATTCACAAACGGTTACTGCGGATGTTGAAGTGGTTCAAACAATTGAAGAGGAAAGTGTCCAAACCATGGAAAAGGGGAATAATGAAAATGTTGAGCCAACTCAAGAAGTTGAAACTGTGGAGAAGGGGAATACTGTTGTAGTTGAGCCAATTGACACAGAGAGCACAGAGAAAGTTCAGGAGGATGTGGATGACGAGAGCAAGAAGAATGACAAGCAGGGTGGTGTTGCCAACCCAGTTGATATTAGTAGTGTGTCAGCTGTGGATGAAGATATCGAACAAGCTGGTTTGCCAGCCGGTGTAGATCCTGAAAATGTGAAAGATGAGCAAAGTGCTCATGGCTCTACTGTGGAGACATCCGATAAAATCACGGAGACTGTATCAACTGAAGTAGTGGTCAGTGATCAGCATACTCATAGTGAAGTAAAGAGTAACAAGGATTTGGCAATCAAGGTGGAGAATGAGGAATCAAAGGCGCAGCTGGACAATGAGGTCCCAAAGCCCCAGGTGGAGTGTGACACAAAGCCCCAACTGGAGTGTGACACAAAGCCCCCGTCTGAGGATCTCATGCCCAACACTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTTTCAAGTAAAATCTGATTCTATTTCTAGTGATTCTGTGTCAATTAATCAAAAGAATGAATTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAAAGATGTACCTGTATCACATTCAATGGATGTTGGAGGGCTGCTTGAGAAAAAGGCATCTGTTGAAGAAAATAGCAATAATGTTACGACTCCAGACTTGAACAAGATCAATAGCAATGATGATGTGGGGTATCCAGAAAAGTTAAACCTAGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTACCTGAGAGTAAGCATGTTGATTCTAAGTTTGATGTTGATGAAAGAGATAATGTGGAGAATATTGAGGTGTCCATTGTGAAGGAGGAAAGTAAAACTATAGTCGTGAAGAATGATCTATCTGCAGGGAAAAGTGATACTCATCAGGACATTGACATTAGTCCTGTTGCCTTGGCTGAGAAACGAAAATTTAACGAGCAAGTTTCAGTTGGGAGCAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACCGAAACAGTTAAAGGGCCAGATCTGAAAAGCACTGTTCCCAGAGCTGCAACTACACCAAAGGACGAGCCAGTTGCGCTGAAACGCAACTTCTCTAGGTCTGATTCAACTGTAACTGATGATGCACCTAAAGAACGCATTGTTCCACCATCACAAAAGCCCCCAACTAATTCCCTCCGAATTGATCGTTTCCTCCGTCCTTTTACCCTAAAAGCAGTGCAAGGGCTTCTTGGTAAAAGTGGGAGTATCACTAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCATCAGTTGAAGAAGCTATTGAGACCAGAAATGCTGTGTATAATTTGCAATGGCCTCCAAATGGTGGGCGGCTCTTAGTTGCCGAGTTTGTTGATCCTCAGGAGGTGAAAATGAAGTTAGAACCTCCTCCTCCTCCTCCTCCTGCCGCCGCCCCTGTCAGCAGTGGTCCAGCAGTTCTTCCTACACCACCATCCTCACAACCAGAGCCTTCCCCCCGTATGCGCAGGGAGCAACCTCCAGCTCCAGCTACTCTCCCACCTCCACCCCCATTGTCGAAGCTCCCACCAGCGGCAAGAGAACGGCTTCCGTCCCCACCGCCCCTTCCAGAGAAGGTTGACCCACCTATTCTCACTTTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGCATCTACTATTTACCTTTGTCTGAAGAGCAAGTATCTGCTAGACTTGCAGCTCGCAGTAAAAGCACTCGGATGTAG 2193 0.4587 MSSSKYPILDNRPIHQWKVTELKEELKRRRLTTKGLKDELVRRLDEALRAEMEADESASKDDANGFEVHAGGGSEDSQTVTADVEVVQTIEEESVQTMEKGNNENVEPTQEVETVEKGNTVVVEPIDTESTEKVQEDVDDESKKNDKQGGVANPVDISSVSAVDEDIEQAGLPAGVDPENVKDEQSAHGSTVETSDKITETVSTEVVVSDQHTHSEVKSNKDLAIKVENEESKAQLDNEVPKPQVECDTKPQLECDTKPPSEDLMPNTSVPENQVSEVNPSLGFQVKSDSISSDSVSINQKNELKDTIITDNVKLEQDIVRPEMVEEPSSRKDVPVSHSMDVGGLLEKKASVEENSNNVTTPDLNKINSNDDVGYPEKLNLDRSSGDDSMEEDLPESKHVDSKFDVDERDNVENIEVSIVKEESKTIVVKNDLSAGKSDTHQDIDISPVALAEKRKFNEQVSVGSNEPAKRQRRWNTETVKGPDLKSTVPRAATTPKDEPVALKRNFSRSDSTVTDDAPKERIVPPSQKPPTNSLRIDRFLRPFTLKAVQGLLGKSGSITSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEFVDPQEVKMKLEPPPPPPPAAAPVSSGPAVLPTPPSSQPEPSPRMRREQPPAPATLPPPPPLSKLPPAARERLPSPPPLPEKVDPPILTLDDLFRKTTATPRIYYLPLSEEQVSARLAARSKSTRM* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g1226 730 MobiDBLite consensus disorder prediction 94 116 - -
Ahy20g1226 730 Pfam SAP domain 16 48 IPR003034 -
Ahy20g1226 730 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 727 - -
Ahy20g1226 730 Gene3D SAP domain 14 59 IPR036361 -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 502 518 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 262 278 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 191 210 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 320 334 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 613 688 - -
Ahy20g1226 730 Pfam RNSP1-SAP18 binding (RSB) motif 685 727 IPR032552 -
Ahy20g1226 730 SUPERFAMILY SAP domain 14 50 IPR036361 -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 376 405 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 94 278 - -
Ahy20g1226 730 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 727 - -
Ahy20g1226 730 SMART sap_9 14 48 IPR003034 -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 351 368 - -
Ahy20g1226 730 CDD RRM_ACINU 532 616 IPR034257 -
Ahy20g1226 730 ProSiteProfiles SAP motif profile. 14 48 IPR003034 -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 51 80 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 211 237 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 129 147 - -
Ahy20g1226 730 SUPERFAMILY RNA-binding domain, RBD 526 614 IPR035979 GO:0003676
Ahy20g1226 730 MobiDBLite consensus disorder prediction 459 534 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 612 691 - -
Ahy20g1226 730 MobiDBLite consensus disorder prediction 320 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g1226 Ahy-Chr20 23055596 23059674 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g1226 K12875 - gmx:100786288 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1226 20 23055596 23059674 Ahy10g0904 10 15115364 15119396 hybridization