LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g1075	ATGGGAGAAACCGGTATCATTGTCCGGTTCCCTGGAAACTTAGACCCCAGAGCTCAAGAGTTCATACCCACAAACACAACCCACACTCCCTTGCCGCAACTGGCAACCGTCTTCCCCCTTCCCCACCACCCCTACACCGCCCAACCCTCGTATCCACCTTACCCTTACCCTTATGCCCCATCCCTTGGGGTTGGTGTACTTCCCTTTCGCGATGCTCAGCTTCCCCACGCCGCCGCCGCCGCCACCGCCGTTCCATTCCCTCACTTCTCCACCTCCGCCGCATATGCAGCTCCTCCTCCTCCTTTCCCGTCGCCTCACCTGTCCACGTCACCCACCCGGTCGTTACTCCTGAGTCCCTTACCATCAGACCTGGCGGTTAGCGAGTCCTCACTGAGGCGCGAACTTGAAGTGTTCGGTGACGTCAGAGGGGTCCAGATGGAAGCCCTCCATGACGGAATCGTGACGGTCCATTTTTATGACCTCAGGGACGCCGAAACGGCGCTAACGGCGATTCGACAGCAACACATGCAGCACCAGGAGAGGCTCCGCAACCACTATGCCTCGTTGTTCAAGGCCAGAAGCGCGTTTCCTCTACCGCCACCGCCGCCGGTGGTTTCTCCGCCGGCGCCCGGTCTCATCGCTGGGAGAGCTGTGTGGGCGCAGTACGTTCTCTCAGTTTGCAACGCCGTCCCGGACGGTCAGAACCAAGGCACCGTCGTGGTCTTTAACTTGGACTCGGACGTTTCCGCCGAGAATCTCAAACGCGTTTTTGAGGCTTTCGGTGCAGTAAAGGAACTAAGAGATACACCGTCGAAAAAGAATCAAAGGTTTGTGGAGTTCTATGACGTTAGAGATGCGGCGAAGGCATTGAAACAAATGGACGGGAAGGAAATTTATGGTAGAAAGGTTGTAATTGAGTTCAGTAGACCCGGTGGTCAAAGCAGAAAGTTCTTCCATTCCGCAGCTTCTAAACAAAAGCCATTGAACCTGAATAATGTTCCACCGTTCTATGCTTCGAATCATCCTCATCACGTGCAACGCAAAAACTCGCGTCGTTTTGGAAGTTCATGCTGGAACTCTTCATGTTCTACTACATTTCCGCAATTGCCCTTGTGGAAGAGTTCAGGTGGTTCGGATTCTGGGTCCGTTGAGGCAGTTGGGAACGCCGTTTCGGAGGAGCAGCTGCAGCGGCGCTCGGACGCTAGTCAGAAGAGGAGTCCCGTTAAAGAAAGCGGCGAGGTCGGTGAAGGAAGCGTAAAACACCACTACCAGCAACATCATCAACAACAACATATAGTAAAGAGTAGACACTGGAAGGGGAAGCAAGGGAAGAAGCATGAGACAAGGTTTCTAATTAGAGAAGACGCCATTGTGGAGTCTAGTTCCAGAGATCCACGAACTACTGTGATGATCAAGAACATTCCCAACAAGTATAGTCAGAAGCTACTATTAAATATGCTGGACAACCATTGCATACACTGCAACGAACAGATTGGCGACGACGAGGACCAACCATTGTCTTCCTACGATTTTGTGTACCTTCCAATTGATTTCAACAACAAGTGCAATGTGGGGTATGGGTTTGTGAACATGACATCTCCCGAAGCCACTCTGCGGCTATATAAGGCGTTCCACCTGCAACATTGGGAGGTATTCAATTCCAGGAAAATTTGCGAAGTTACATATGCAAGAGTCCAGGGTTTGGAAGCTTTGAAAGAGCATTTCAAGAACTCAAAGTTCCCATGCGAGATGGAGCACTACCTGCCGGTGGTGTTTTCACCTCCTCGGGACGGTAAGTCCCTGACAGAGCCACTTCCAATAGTTGGCAACAACAAGAACAACAACCACCACCACCACAGCATTATTATTCCCATGGCCATGATGAACGTTCAAAATGGTGTCCAAAACTCTGACGAGGATGATGATGATTTTGATGATGATGATAGGGCAACAAGAAGTGCTTCTACAATTGCTTGTGAAGACGTGCATAGTAGCCAAAGTGGCGGCGTATGTATGATGATTGATGAAAACACTGAGTAG	2040	0.5098	MGETGIIVRFPGNLDPRAQEFIPTNTTHTPLPQLATVFPLPHHPYTAQPSYPPYPYPYAPSLGVGVLPFRDAQLPHAAAAATAVPFPHFSTSAAYAAPPPPFPSPHLSTSPTRSLLLSPLPSDLAVSESSLRRELEVFGDVRGVQMEALHDGIVTVHFYDLRDAETALTAIRQQHMQHQERLRNHYASLFKARSAFPLPPPPPVVSPPAPGLIAGRAVWAQYVLSVCNAVPDGQNQGTVVVFNLDSDVSAENLKRVFEAFGAVKELRDTPSKKNQRFVEFYDVRDAAKALKQMDGKEIYGRKVVIEFSRPGGQSRKFFHSAASKQKPLNLNNVPPFYASNHPHHVQRKNSRRFGSSCWNSSCSTTFPQLPLWKSSGGSDSGSVEAVGNAVSEEQLQRRSDASQKRSPVKESGEVGEGSVKHHYQQHHQQQHIVKSRHWKGKQGKKHETRFLIREDAIVESSSRDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDDEDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKSLTEPLPIVGNNKNNNHHHHSIIIPMAMMNVQNGVQNSDEDDDDFDDDDRATRSASTIACEDVHSSQSGGVCMMIDENTE*	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy20g1075	679	MobiDBLite	consensus disorder prediction	373	396	-	-
	Ahy20g1075	679	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	113	189	IPR000504	GO:0003723
	Ahy20g1075	679	Gene3D	-	413	570	IPR012677	-
	Ahy20g1075	679	MobiDBLite	consensus disorder prediction	633	655	-	-
	Ahy20g1075	679	Gene3D	-	231	318	IPR012677	-
	Ahy20g1075	679	MobiDBLite	consensus disorder prediction	397	423	-	-
	Ahy20g1075	679	SMART	rrm1_1	238	306	IPR000504	GO:0003723
	Ahy20g1075	679	SMART	rrm1_1	114	183	IPR000504	GO:0003723
	Ahy20g1075	679	MobiDBLite	consensus disorder prediction	424	444	-	-
	Ahy20g1075	679	MobiDBLite	consensus disorder prediction	373	444	-	-
	Ahy20g1075	679	PANTHER	RNA BINDING PROTEIN	46	642	-	-
	Ahy20g1075	679	SUPERFAMILY	RNA-binding domain, RBD	237	545	IPR035979	GO:0003676
	Ahy20g1075	679	PANTHER	TERMINAL EAR1-LIKE 1	46	642	-	-
	Ahy20g1075	679	SUPERFAMILY	RNA-binding domain, RBD	99	177	IPR035979	GO:0003676
	Ahy20g1075	679	Pfam	RNA recognition motif 2	466	576	IPR007201	-
	Ahy20g1075	679	CDD	RRM3_EAR1_like	466	567	IPR034458	-
	Ahy20g1075	679	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	237	310	IPR000504	GO:0003723
	Ahy20g1075	679	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	239	303	IPR000504	GO:0003723
	Ahy20g1075	679	Coils	Coil	161	181	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g1075	Ahy-Chr20	16772179	16776808	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy20g1075	-		-	adu:107469016	1216.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g1075	20	16772179	16776808	Ahy10g0773	10	9684710	9689057	hybridization