LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy10g0773	ATGGGAGAAACCGGTATCATTTTCCGGTTCCCTGGAAACTTAGACCCCAGAGCTCAAGAGTTCATACCCACAAACACAACCCACACTCCCTTGCCGCAACTGGCAACCGTCTTCCCCCTTCCCCACCACCCCTACACCGCCCAACCCTCGTATCCACCTTACCCTTACCCTTACGCCCCATCCCTTGGGGTTGGTGTACTTCCCTTTCACGATGCTCAGCTTCCCCACGCCGCCGCCGCCGCCGCCGCCGTTCCATTCCCTCACTTCACCTCCGCCGCATATGCAGCTCCTCCTCCTCCTTTCCCGTCGCCTCACCTGTCCACGTCACCAACCCGGTCGTTGCTCCTGAGTCCCTTACCATCGGACCTGGCGGTTAGCGAGTCCTCACTGAGGCGCGAACTTGAAGTGTTCGGTGACGTCAGAGGGGTCCAGATGGAAGCCCTCCATGACGGAATCGTGACGGTCCATTTTTATGACCTCAGGGACGCCGAAACGGCGCTAACGGCGATTCGACAGCAACACATGCAGCACCAGGAGAGGCTCCGCAACCACTATGCCTCGTTGTTCAAGGCCAGAAGCGCGTTTCCTCTACCGCCACCGCCGCCGGTGGTTTCTCCGCCGGCGCCCGGTCTCATCGCCGGGAGAGCTGTGTGGGCGCAGTACGTTCTCCCGGTTTGCAACGCCGTCCCGGACGGTCAGAACCAAGGCACCGTCGTGGTCTTTAACTTGGACTCGGACGTTTCCGCCGAGAATCTCAAACGCGTTTTTGAGGCTTTCGGTGCAGTAAAGGAACTAAGAGATACACCGTCGAAAAAGAATCAAAGGTTTGTGGAGTTCTATGACGTTAGAGATGCGGCGAAGGCATTGAAAGAAATGGACGGGAAGGAAATTTATGGTAGAAAGGTTGTAATTGAGTTCAGTAGACCCGGTGGTCAAAGCAGAAAGTTCTTCCATTCCCCAGCTTCTAAACAAAAGTCTTTGAACCTGAATAATGTTCCACCGTTCTATGCTTCGAATCATCCTCATCACGTGCAACGCAAAAACTCGCGTCGTTTTGGAAGTTCATGCTGGAACTCTTCATGTTCTACTACATTTCCGCAATTGCCCTTGTGGAAGAGTTCAGGTGGTGGAAGCAAGGGAAGCGTGAACGGGGGTTCGGATTCTGGGTCCGTTGAGGCAGTTGGGAACGCCGTTTCGGAGGAGCAGCTGCAGCGGCGCTCGGACGCTAGTCAGAAGAGGAGTCCCGTTAAAGAAAGCGGCGAGGTCGGTGAAGGAAGCGTAAAACACCACTACCAGCAACATCATCAACAACAACATATAGTAAAGAGTAGACACTGGAAGGGGAAGCAAGGGAAGAAGCACGAGACAAGGTTTCTAATTAGAGAAGACGCCATTGTGGAGTCTAGTTCCAGAGATCCACGAACTACTGTGATGATCAAGAACATTCCCAACAAGTATAGTCAGAAGCTACTATTAAATATGCTGGACAACCATTGCATACACTGCAACGAACAGATTGGCGACGACGAGGACCAACCATTGTCTTCCTACGATTTTGTGTACCTTCCAATTGATTTCAACAACAAGTGCAATGTGGGGTATGGGTTTGTGAACATGACATCTCCCGAAGCCACTCTGCGGCTATATAAGGCGTTCCACCTGCAACATTGGGAGGTATTCAATTCCAGGAAAATTTGTGAAGTTACATATGCAAGAGTCCAGGGTTTGGAAGCTTTGAAAGAGCATTTCAAGAACTCAAAGTTCCCATGCGAGATGGAGCACTACCTGCCGGTGGTGTTTTCACCTCCTCGGGACGGTAAGTCCCTGACGGAGCCACTTCCAATAGTTGGCAACAACAAGAACAACCACCACCACCACCACAGCATTATTATTCCCATGGCCATGATGAACGTTCAAAATGGTGTCCAAAACTCTGATGAGGATGATGATGATTTTGATGATGATGATAGGGCAACAAGAAGTGCTTCTACAATTGCTTGTGAAGACGTGCATAGTAGCCAAAGTGGCGGCGTATGTGATGATGATTGA	2049	0.5144	MGETGIIFRFPGNLDPRAQEFIPTNTTHTPLPQLATVFPLPHHPYTAQPSYPPYPYPYAPSLGVGVLPFHDAQLPHAAAAAAAVPFPHFTSAAYAAPPPPFPSPHLSTSPTRSLLLSPLPSDLAVSESSLRRELEVFGDVRGVQMEALHDGIVTVHFYDLRDAETALTAIRQQHMQHQERLRNHYASLFKARSAFPLPPPPPVVSPPAPGLIAGRAVWAQYVLPVCNAVPDGQNQGTVVVFNLDSDVSAENLKRVFEAFGAVKELRDTPSKKNQRFVEFYDVRDAAKALKEMDGKEIYGRKVVIEFSRPGGQSRKFFHSPASKQKSLNLNNVPPFYASNHPHHVQRKNSRRFGSSCWNSSCSTTFPQLPLWKSSGGGSKGSVNGGSDSGSVEAVGNAVSEEQLQRRSDASQKRSPVKESGEVGEGSVKHHYQQHHQQQHIVKSRHWKGKQGKKHETRFLIREDAIVESSSRDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDDEDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKSLTEPLPIVGNNKNNHHHHHSIIIPMAMMNVQNGVQNSDEDDDDFDDDDRATRSASTIACEDVHSSQSGGVCDDD*	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy10g0773	682	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	236	309	IPR000504	GO:0003723
	Ahy10g0773	682	Gene3D	-	230	316	IPR012677	-
	Ahy10g0773	682	SUPERFAMILY	RNA-binding domain, RBD	98	176	IPR035979	GO:0003676
	Ahy10g0773	682	SMART	rrm1_1	237	305	IPR000504	GO:0003723
	Ahy10g0773	682	SMART	rrm1_1	113	182	IPR000504	GO:0003723
	Ahy10g0773	682	SUPERFAMILY	RNA-binding domain, RBD	236	552	IPR035979	GO:0003676
	Ahy10g0773	682	MobiDBLite	consensus disorder prediction	405	431	-	-
	Ahy10g0773	682	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	238	302	IPR000504	GO:0003723
	Ahy10g0773	682	MobiDBLite	consensus disorder prediction	368	450	-	-
	Ahy10g0773	682	MobiDBLite	consensus disorder prediction	641	682	-	-
	Ahy10g0773	682	MobiDBLite	consensus disorder prediction	432	450	-	-
	Ahy10g0773	682	Pfam	RNA recognition motif 2	474	584	IPR007201	-
	Ahy10g0773	682	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	112	188	IPR000504	GO:0003723
	Ahy10g0773	682	PANTHER	RNA BINDING PROTEIN	46	649	-	-
	Ahy10g0773	682	Gene3D	-	421	578	IPR012677	-
	Ahy10g0773	682	Coils	Coil	160	180	-	-
	Ahy10g0773	682	CDD	RRM3_EAR1_like	474	575	IPR034458	-
	Ahy10g0773	682	PANTHER	TERMINAL EAR1-LIKE 1	46	649	-	-
	Ahy10g0773	682	MobiDBLite	consensus disorder prediction	368	404	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy10g0773	Ahy-Chr10	9684710	9689057	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy10g0773	-		-	adu:107469016	1234.55

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy20g1075	20	16772179	16776808	Ahy10g0773	10	9684710	9689057	hybridization