Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0976 ATGGTAAGTGTACTTGCTGATTTGGAAAAGATGCCTGGTTTTGTTGCTGGAAAGAAGAGATCTACAGGCCGAAACATGTGTTTCACCAATTTGGCCAATCAAGACAAGTTAACTTCTTTGCAAACCAATCATTTCTTTGCCTCTGAGGTACTGGAAAACGATGATAGCCCCATTCTACCTGGTCTGCCTGATGATGTGGCAAAACATTGCCTTGCACTTGTGCCTCGTTCTAACGTCCCAACTATTGGTGGTGTCTGTAAGAGATGGAGGTCATTTATTCAAAGCAAAGAGTTCATTACTGTGCGAAAATTGGCAGGAATGGTTGAGGAATGGCTCTATTTCTTAACAATGGATACTGAAGGAGAGGGAACTCATTGGGAGGTTATGGATCGTCCCAGTCATAAATGCCAAGCTCTTCCACCGATGCCTGGTCCGGTAAAGGCTGGATTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTTATTGCTGGATATTCAACTACAGATAGAAGTACCTTTGCCTCAGCAGAGGTTTACCAATATGACTCGCTCCTCAACAATTGGAGCAGACTATCAAAAATGAATGTGGCTCGTTATGACTTTGCATGTGCCGAAGTCAATGGCTTGGTTTATGCTGTAGGAGGCTATGGATTGGACGGTGAAATTCTCTCTAGTGCTGAGGTGTACGACCCTGACACCGACAAATGGACACTGATAGAGAGTGTCCGGCGCCCAAGATGGGGTTGCTTTGCCTGTTCATTGGATGGTAAGCTCTATGTCATGGGTGGAAGGTCGAGCTTTACAATTGGAAACTCCAAGTTTGTTGATGTTTATGACCCTGAAGTCCACAGCTGGGGTGAGTTCAAGAACGGCTGTGTTATGGTCACAGCGCACGCAGTATTGGGAAAGAAATTGTTCTGTATGGAGTGGAAGAACCAGAGGAAGCTAGCAATATTCTGTTCTGAAGACAATTCGTGGAAAATGGTACCACTTCCACTCACTGGTAGCTCCAGTGTTGATTTTAGATTTGGGATATTTGATGAAAAGCTGTTGCTATTCTCACTGGAAGCAGGACCCTCTTATCAAACTTTGTTGTATGATCCAAATGCAGCTAAAGGGTCAGAGTGGCAAATTTCTGATATAAAACCATCTGGTGTGTTCTTGTGCAGTGTAACAATCAAGGCATGA 1188 0.4411 MVSVLADLEKMPGFVAGKKRSTGRNMCFTNLANQDKLTSLQTNHFFASEVLENDDSPILPGLPDDVAKHCLALVPRSNVPTIGGVCKRWRSFIQSKEFITVRKLAGMVEEWLYFLTMDTEGEGTHWEVMDRPSHKCQALPPMPGPVKAGFGVVVLNGKLLVIAGYSTTDRSTFASAEVYQYDSLLNNWSRLSKMNVARYDFACAEVNGLVYAVGGYGLDGEILSSAEVYDPDTDKWTLIESVRRPRWGCFACSLDGKLYVMGGRSSFTIGNSKFVDVYDPEVHSWGEFKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFCSEDNSWKMVPLPLTGSSSVDFRFGIFDEKLLLFSLEAGPSYQTLLYDPNAAKGSEWQISDIKPSGVFLCSVTIKA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0976 395 SMART kelc_smart 209 256 IPR006652 GO:0005515
Ahy20g0976 395 SMART kelc_smart 158 208 IPR006652 GO:0005515
Ahy20g0976 395 SMART fbox_2 62 102 IPR001810 GO:0005515
Ahy20g0976 395 Gene3D - 95 391 IPR015915 GO:0005515
Ahy20g0976 395 SUPERFAMILY F-box domain 48 98 IPR036047 GO:0005515
Ahy20g0976 395 PANTHER OS02G0202900 PROTEIN 11 395 IPR045887 -
Ahy20g0976 395 SUPERFAMILY Kelch motif 109 362 IPR015915 GO:0005515
Ahy20g0976 395 PANTHER KELCH REPEAT F-BOX PROTEIN 11 395 - -
Ahy20g0976 395 Pfam Kelch motif 148 195 IPR006652 GO:0005515
Ahy20g0976 395 Pfam Kelch motif 197 240 IPR006652 GO:0005515
Ahy20g0976 395 Pfam Kelch motif 248 285 IPR006652 GO:0005515
Ahy20g0976 395 Pfam F-box domain 61 98 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0976 Ahy-Chr20 14023204 14026724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0976 62 240 Miscellaneous Gene Families AT4G33900 30.102 9.14e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0976 - - gmx:100802912 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0976 20 14023204 14026724 Ahy10g0691 10 7627740 7631252 hybridization
Ahy20g0976 20 14023204 14026724 Ahy13g4468 13 144809787 144813067 PCT
Ahy20g0976 20 14023204 14026724 Ahy3g4187 3 141833992 141836472 PCT
Ahy13g4468 13 144809787 144813067 Ahy20g0976 20 14023204 14026724 PCT
Ahy3g4187 3 141833992 141836472 Ahy20g0976 20 14023204 14026724 PCT