Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4468 ATGATCATTTCAAAAATGCCTGGATGCATTGCTGGTAAGAAGTGGTTCACAGAACCGAATATGTGTTTTTCTAATTTACCCAATAAGGAAAATCAAACACTTTCTAAGAGCAAGCATTCTGTGCGCTCTGAGTTATCGGATAAGGATGATGATAGCTCGATTCTACCTCGGCTGCCTGATGATGTTTCCAAGTATTGCTTAGCACTTGTGCCTCATTCGGACCTCCCGGCTATGGCCGGTGTTTGTAAGAGATGGAGGTGTTTCATTCAGAGCAAAGAATTTATAATGGTAAGAAAATTGGCTGGCTTGGTTGAGGAATGGCTTTTCCTGTTAACTGCAGATAAAGAAGGGAAAGGAAGCCATTGGGAGGTAGTGGATTGTCAGGGTCAGAATCGTCGATCTCTTCCACCAATGCCTGGTCCAACAAAGGCTGGATTCGGGGTGGTGGTTGTTAATGGGAAGCTACTTGTCATGGCTGGCTATTCAGTTATTGATGGAACTGCCACTGCCTCACCAGAGGTTTACCAATACAATTCTTGTGTCAACAGTTGGAGCAGGTTATCAAACATGAATGTGGCTCGATATGACTTTGCTTGTGCTGAGGTCAACGGCTTGGTGTACGCTGTTGGAGGCAATGGAGTAGATGGCGACAGCCTCTCCAGTGTCGAGGTCTATGATCCAGAAACTGACAAATGGACATTGATTGAGAGCCTTCGTCGGCCGAGACGAGGTTGCTTCGCGTGTGGATTCGAAGGGAAGCTGTACGTGATGGGTGGAAGGTCGAGTTTTACAATTGGAAACTCAAAATTTGTTGATGTTTACAATCCTGAAAGGCACAGTTGGTGTGAGATGAAAAATGGTTGTGTCATGGTGACTGCTCATGCAGTACTGGGAAAGAAGCTGTTCTGTATGGAGTGGAAGAATCAGAGGAAGTTGGCAATCTTCAATTCAGAGGACAATACATGGAAAATGGAGCCTCTACCTTTGACTGGGAGCTCCAGTATCGGTTTCCGGTTCGGAATTCTTGATGGTAAACTCTTGCTGTTCTCACTGGAGGAGGAACCTACATGCAAAACTTTGTTGTATGATCCAACTGCAGCCCCTGGATCAGAGTGGCAAACAAGTGAGATCAAACCATCTGGGTTATGCTTGGGCAGTGTAACAGTCAAGGCATGA 1176 0.4558 MIISKMPGCIAGKKWFTEPNMCFSNLPNKENQTLSKSKHSVRSELSDKDDDSSILPRLPDDVSKYCLALVPHSDLPAMAGVCKRWRCFIQSKEFIMVRKLAGLVEEWLFLLTADKEGKGSHWEVVDCQGQNRRSLPPMPGPTKAGFGVVVVNGKLLVMAGYSVIDGTATASPEVYQYNSCVNSWSRLSNMNVARYDFACAEVNGLVYAVGGNGVDGDSLSSVEVYDPETDKWTLIESLRRPRRGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYNPERHSWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNSEDNTWKMEPLPLTGSSSIGFRFGILDGKLLLFSLEEEPTCKTLLYDPTAAPGSEWQTSEIKPSGLCLGSVTVKA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4468 391 MobiDBLite consensus disorder prediction 35 53 - -
Ahy13g4468 391 Pfam Kelch motif 241 286 IPR011498 GO:0005515
Ahy13g4468 391 Pfam F-box domain 56 93 IPR001810 GO:0005515
Ahy13g4468 391 PANTHER KELCH REPEAT F-BOX PROTEIN 6 391 - -
Ahy13g4468 391 SUPERFAMILY Kelch motif 105 350 IPR015915 GO:0005515
Ahy13g4468 391 Pfam Kelch motif 144 191 IPR006652 GO:0005515
Ahy13g4468 391 Pfam Kelch motif 193 238 IPR006652 GO:0005515
Ahy13g4468 391 ProSiteProfiles F-box domain profile. 52 100 IPR001810 GO:0005515
Ahy13g4468 391 PANTHER OS02G0202900 PROTEIN 6 391 IPR045887 -
Ahy13g4468 391 SMART kelc_smart 253 298 IPR006652 GO:0005515
Ahy13g4468 391 SMART kelc_smart 154 204 IPR006652 GO:0005515
Ahy13g4468 391 SMART kelc_smart 205 252 IPR006652 GO:0005515
Ahy13g4468 391 MobiDBLite consensus disorder prediction 34 53 - -
Ahy13g4468 391 Gene3D - 94 388 IPR015915 GO:0005515
Ahy13g4468 391 SUPERFAMILY F-box domain 41 94 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4468 Ahy-Chr13 144809787 144813067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4468 58 236 Miscellaneous Gene Families AT4G33900 28.351 4.33e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4468 - - adu:107482114 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4468 13 144809787 144813067 Ahy13g4468 13 144809787 144813067 ECH
Ahy13g4468 13 144809787 144813067 Ahy3g4187 3 141833992 141836472 hybridization
Ahy20g0976 20 14023204 14026724 Ahy13g4468 13 144809787 144813067 PCT
Ahy10g0691 10 7627740 7631252 Ahy13g4468 13 144809787 144813067 PCT
Ahy13g4468 13 144809787 144813067 Ahy20g0976 20 14023204 14026724 PCT
Ahy13g4468 13 144809787 144813067 Ahy10g0691 10 7627740 7631252 PCT