Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2945 ATGGGTTCCCTTCCCGCCAGTGGAAGCAGCAGTAGAAGCTTTCAGCAGCGTGTGTTCTCCCTTTTGCAACGATGCAACAGCCTCAACATTCTCCTCCAAATCCACACCCAACTAATCCTCAACTCCCTCTCTTACAAGAACAACTTCATCTTCAAGCTCCTCTCTTTATACGTCTCCTACGGCCACCTCCACCATGCCCACACCCTCTTCTCCACTCTCCACAAACCCACCACCCCCCTCTGGAACCAGATCATCAGGGCCCATGCCCGAACCCCAGCAGCTCCTTTCAAATCTGTGGAGTGCTACAATCGCATGGTGGCTTCTGGGTCGGAGCCTGATGGGTTCACGTACTCGTTCCTTCTGAGCGCGTGCGCACGTGGTGGGTTGGTTTGGGAAGGGGAACAGGTGCATTGCAAGGTTTTGGTCAAAGGGTATTGCTACAATTTGTTTGTGGAGACAAGTTTGGTGAATTTCTATGCGGTGTGCGGTGGTGTTGGGAAAGCACGTTACGTGTTTGATGAAATGAATCAGAGAAGTGTTGCTAGCTGGAACTCTATGCTTGCTGGGTATGTTAGGTGTGGTGATTTTGATGGGGCCAGAAGGGTTTTCGATGAGATGCCTTGTAGGAATGTTGTGTCTTGGACCACCATGGTTGCCGGATGCGCTCGTGGCGGCAAGTGCAAGCAGGCTTTGTCGTTGTTTGGTGAGATGAGTAGGGCGGGTGTGGAATTGGACCAGGTGGCGCTGGTGGCTGCCTTGACAGCATGCGCTGAGTTGGGGGATCTAAAGTTGGGAAGATGGATACATTGGTATGTTGAACAGAGATTTGTTGTGAGGAACAATGAGCAGCCTTCATTGCGTTTGAGCAATGCACTCATTCATATGTATGCCAGTTGTGGAATCATTGATGATGCTTACAGAGTGTTTATGAATATGCCGCGGAAAAGCACTGTGTCTTGGACTAGCATCATCATGGCTTTTGCGAAACAAGGCCTTGGAAAGGAAGCGCTTGATCTTTTTAAGGCTATGCTTAGTGATAGTGTGGGTGTAAATGAAATAAGACCAGATGAAGTAACCTTCATTGGAGTGCTTTGTGCTTGCAGCCATGCTGGGTTTGTAGACGAAGGACGCCAGATTTTTGCATCTATGAAACATACTTGGGGAATCCACCCAAGGATTGAGCACTATGGATGCATGGTTGATCTCTTGAGCCGTGCTGGCTTCTTAGATGAAGCACAGGGACTTATCAAAATCATGCCTTTAAAACCAAATGATGTGCTATGGGGTGCCCTTCTTGGGGGTTGTCGAATACACAAGAACTCAGAACTAGCATCGGGAGTGGCAAACAAGGTAGTAGCCGAGCTCAACGTCAACCAAGCCGCAGGCTATCTTGTCCTCTTGTCAAACATATATGCTTTTGCCAAAAGGTGGCAGGATGTAGTTGCTGTGAGACAAAAAATGATTGAGATGGGTGTTAAAAAGCCTCCGGGCAGAAGTGTTGTGCAAATTAATGGAGTTCTGCATAACTTTATGGCTGGTGACGTGACGCATAAGCATTCGTATTATATCTATGAAACCCTCCATGGGATCACCAAACAAGCCAATTGGGAAGACTATGAACCAGACATAACAGAGGTCTTAGTTGATGCTTAG 1653 0.4797 MGSLPASGSSSRSFQQRVFSLLQRCNSLNILLQIHTQLILNSLSYKNNFIFKLLSLYVSYGHLHHAHTLFSTLHKPTTPLWNQIIRAHARTPAAPFKSVECYNRMVASGSEPDGFTYSFLLSACARGGLVWEGEQVHCKVLVKGYCYNLFVETSLVNFYAVCGGVGKARYVFDEMNQRSVASWNSMLAGYVRCGDFDGARRVFDEMPCRNVVSWTTMVAGCARGGKCKQALSLFGEMSRAGVELDQVALVAALTACAELGDLKLGRWIHWYVEQRFVVRNNEQPSLRLSNALIHMYASCGIIDDAYRVFMNMPRKSTVSWTSIIMAFAKQGLGKEALDLFKAMLSDSVGVNEIRPDEVTFIGVLCACSHAGFVDEGRQIFASMKHTWGIHPRIEHYGCMVDLLSRAGFLDEAQGLIKIMPLKPNDVLWGALLGGCRIHKNSELASGVANKVVAELNVNQAAGYLVLLSNIYAFAKRWQDVVAVRQKMIEMGVKKPPGRSVVQINGVLHNFMAGDVTHKHSYYIYETLHGITKQANWEDYEPDITEVLVDA* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2945 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Ahy1g2945 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Ahy1g2945 550 Pfam E motif 438 502 IPR046848 -
Ahy1g2945 550 Gene3D Tetratricopeptide repeat domain 350 529 IPR011990 GO:0005515
Ahy1g2945 550 Gene3D Tetratricopeptide repeat domain 279 349 IPR011990 GO:0005515
Ahy1g2945 550 Gene3D Tetratricopeptide repeat domain 17 161 IPR011990 GO:0005515
Ahy1g2945 550 PANTHER OS09G0411600 PROTEIN 9 528 - -
Ahy1g2945 550 Pfam PPR repeat 212 242 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 318 346 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 153 178 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 182 210 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 358 384 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 115 144 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 395 419 IPR002885 -
Ahy1g2945 550 Pfam PPR repeat 290 315 IPR002885 -
Ahy1g2945 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 528 - -
Ahy1g2945 550 Gene3D Tetratricopeptide repeat domain 165 278 IPR011990 GO:0005515
Ahy1g2945 550 TIGRFAM PPR: pentatricopeptide repeat domain 182 211 IPR002885 -
Ahy1g2945 550 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Ahy1g2945 550 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2945 Ahy-Chr1 110870786 110872438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2945 7 547 Glycoside Hydrolase AT3G49170 30.769 1.21e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2945 - - aip:107610465 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1927 11 124877069 124879216 Ahy1g2945 1 110870786 110872438 hybridization