Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1927 ATGGGTTCCCTTCCCGCCAGTGGAAGCAGCAGTAGAAGCTTTCAGCAGCGTGTGTTCTCCCTTTTGCAACGATGCAACAGCCTCAACATTCTCCTCCAAATCCACACCCAACTAATCCTCAACTCCCTCTCTTACAAGAACAACTTCATCTTCAAGCTCCTCTCTTTATACGTCTCCTACGGCCACCTCCACAATGCCCACACCCTCTTCTCCACTCTCCACAAACCCACCACCCCCTCTGGAACCAGATCATCAGGGCCCATGCCCGAACCCCAGCAGCTCCTTTCAAATCTGTGGAGTGCTACAATCGCATGGTGGCTTCTGGGTCGGAGCCTGATGGGTTCACGGTATTGCTACAATGTGTTTGTGGAGACAAGTTTGGTGAATTTCTATGCGGTGTGCGGTGGTGTTGGGAAAGCACGTTACGTGTTTGATGAAATGAATCAGAGAAGTGTTGCTAGCTGGAACTCTATGCTTGCTGGGTATGTTAGGTGTGGTGATTTTGATGGGGCCAGAAGGGTTTTCGATGAGATGCCTTGTAGGAATGTTGTGTCTTGGACCACCATGGTTGCCGGATGCGCTCGTGGCGGCAAGTGCAAGCAGGCTTTGTCGTTGTTTGGTGAGATGAGTAGGGCGGGTGTGGAATTGGACCAGGTGGCGCTGGTGGCTGCCTTGACAGCATGCGCTGAGTTGGGGGATCTAAAGTTGGGAAGATGGATACATTGGTATGTTGAACAGAGATTTGTTGTGAGGAACAATGAGCAGCCTTCATTGCGTTTGAGCAATGCACTCATTCATATGTATGCCAGTTGTGGAATCATTGATGATGCTTACAGAGTGTTTATCAATATGCCGCGGAAAAGCACTGTGTCTTGGACTAGCATCATCATGGCTTTTGCGAAACAAGGCCTTGGAAAGGAAGCGCTTGATCTTTTTAAGGCTATGCTTAGTGATGGTGTTGGTGTAAATGAAATAAGACCAGATGAAGTAACCTTCATTGGAGTGCTTTGTGCTTGCAGCCATGCTGGGTTTGTAGACGAAGGACGCCAGATTTTTGCATCTATGAAACATACTTGGGGAATCCACCCAAGGATTGAGCACTATGGATGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCACAGGGACTTATCGAAACCATGCCTTTAAAACCAAATGATGTGCTATGGGGTGCCCTTCTTGGGGGTTGTCGAATACACAAGAACTCAGAACTAGCATCGGGAGTGGCAAACAAGGTAGTAGCCGAGCTCAACGTCAACCAAGCCGCAGGCTATCTTGTCCTCTTGTCAAACATATATGCTTTTGCCAAAAGGTGGCAGGATGTAGTTGCTATGAGACAAAAAATGATTGAGATGGGTGTTAAAAAGCCTCCGGGCAGAAGTGTTGTGCAAATTAATGGAGTTCTGCATAACTTTGTGGCTGGTGACGTGACGCATAAGCATTCTTATTATATCTATGAAACCCTCCATGAGATCACCAAACAAGCCAATTGGGAAGACTATGAACCAGACATAACAGAGCTCAACGTTATTTCCTTTGTGAGTATGCTTGATGTTGGTTTTGGCGAAACAAAGCCTATATCAGTTCGAAGAGAGGCTTATTGGATTCTCTTTGAGCACTATCTTCAGGTCCATAACTGA 1671 0.4704 MGSLPASGSSSRSFQQRVFSLLQRCNSLNILLQIHTQLILNSLSYKNNFIFKLLSLYVSYGHLHNAHTLFSTLHKPTTPSGTRSSGPMPEPQQLLSNLWSATIAWWLLGRSLMGSRYCYNVFVETSLVNFYAVCGGVGKARYVFDEMNQRSVASWNSMLAGYVRCGDFDGARRVFDEMPCRNVVSWTTMVAGCARGGKCKQALSLFGEMSRAGVELDQVALVAALTACAELGDLKLGRWIHWYVEQRFVVRNNEQPSLRLSNALIHMYASCGIIDDAYRVFINMPRKSTVSWTSIIMAFAKQGLGKEALDLFKAMLSDGVGVNEIRPDEVTFIGVLCACSHAGFVDEGRQIFASMKHTWGIHPRIEHYGCMVDLLSRAGFLDEAQGLIETMPLKPNDVLWGALLGGCRIHKNSELASGVANKVVAELNVNQAAGYLVLLSNIYAFAKRWQDVVAMRQKMIEMGVKKPPGRSVVQINGVLHNFVAGDVTHKHSYYIYETLHEITKQANWEDYEPDITELNVISFVSMLDVGFGETKPISVRREAYWILFEHYLQVHN* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1927 556 TIGRFAM PPR: pentatricopeptide repeat domain 154 183 IPR002885 -
Ahy11g1927 556 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Ahy11g1927 556 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Ahy11g1927 556 Gene3D Tetratricopeptide repeat domain 16 247 IPR011990 GO:0005515
Ahy11g1927 556 Gene3D Tetratricopeptide repeat domain 324 490 IPR011990 GO:0005515
Ahy11g1927 556 Gene3D Tetratricopeptide repeat domain 248 323 IPR011990 GO:0005515
Ahy11g1927 556 Pfam PPR repeat 262 287 IPR002885 -
Ahy11g1927 556 Pfam PPR repeat 125 150 IPR002885 -
Ahy11g1927 556 Pfam PPR repeat 330 356 IPR002885 -
Ahy11g1927 556 Pfam PPR repeat 290 320 IPR002885 -
Ahy11g1927 556 Pfam PPR repeat 154 182 IPR002885 -
Ahy11g1927 556 Pfam PPR repeat 184 214 IPR002885 -
Ahy11g1927 556 Pfam PPR repeat 367 391 IPR002885 -
Ahy11g1927 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Ahy11g1927 556 Pfam E motif 410 474 IPR046848 -
Ahy11g1927 556 PANTHER OS09G0411600 PROTEIN 9 77 - -
Ahy11g1927 556 PANTHER OS09G0411600 PROTEIN 114 501 - -
Ahy11g1927 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Ahy11g1927 556 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 77 - -
Ahy11g1927 556 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 114 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1927 Ahy-Chr11 124877069 124879216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1927 131 514 Glycoside Hydrolase AT3G49170 36.061 3.08e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1927 - - aip:107610465 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1927 11 124877069 124879216 Ahy11g1927 11 124877069 124879216 ECH
Ahy11g1927 11 124877069 124879216 Ahy1g2945 1 110870786 110872438 hybridization