Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2887 ATGAGGTGGGAAAAGGTTCAGATGAACCCTTTAGAGGGCAATGATGGAGGAGGGCCAGGGAAGAGGTGGGGACACACCTGCAACGCCATTAGAGGTGGCAGACTTGTCTATGTCTTCGGTGGTTATGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAACAGACTTGGAGCCAACCTGCAATAAAAGGCACCCCGCCTACTCCTAGAGACAGCCATACTTGCACTGCAATTGGTGATAATCTGTATGTGTTTGGGGGTACCGATGGCATGAACCCGTTGAAGGATTTGCATATTCTAGACACTTCTTCAAATACGTGGATATCTCCAACTATAAGAGGCGAAGGGCCAGAGGCACGGGAGGGTCATAGTGCTGCAGTTGTTGGCAAACGGCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAATAATACTGAAGTCTACTATAATGATCTTTATATATTGAATACAGAAACATTTGTATGGAAGTGTGCTCAAACATCAGGCACTCCACCATCTCCTCGCGATAGCCATACTTGCTCGTCTTGGAAAAACAAAATTATCGTGTTAGGGGGTGAAGATGGTCATGATTATTACTTGTCTGATGTCCACATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAACTGTTGCCTCCACGAGCTGGTCATTCTACTGTCGCTTTTGGCAAGAACTTGTTTGTATTTGGCGGATTTACGGATGCACAAAACCTATACAATGACCTCTATATGCTTGACATTGATACTGGTATTTGGACAAATGTTGCAACGACTACCAATGGCCCTTCTGCTCGATTTTCTGTAGCCGGTGACTGTTTAGACCCATTTGTGGGCGGTGCTCTTGTGTTCATCGGTGGTTGTAATAAAAGCCTCGAGGCCCTGGACGACATGTATTTCCTCTACACAGGGATTGCTAGGGAAAGCGAACAGAGACCAGAGAAGTTATCTTTAAGAAAGCAGTTGAAACTAAAATGCCAAGAGCAAAATACCAATCCTGTTCAAAATCAAGTTCTGGTTAGATATGGAGTCGGTGCTGATGTTAGCCCGCTCATGACAGTGTTGAATTATAGCCAGCCAAGTAGACTAAATCTCCCAGTAAATCAAGGCTTCACTCCTGGAAAGAAAATGTTTGAATGCAAGGTTACTGAATCCATCTCGGAAGGTTATACTATCGAAACTATTATTGATGGAAAGCTTCTTCGAGGTGTTCTGTTTTCAAATAAGCCAAAGTCTTTGCACCCAGCTGCTAATACTTCAACCAGCAGGAAAAGGGCCGGTGGTGAAACTGATGTTATCTCAAATGGTATACACCCTGATAAATCAAAGATTTCTAAAGTGAACAATCAAGATGAAACAGAAAACAGACAAACAGTTCATGGAGAGAGTTTAGAATCTCATGAACACCGTGCTGAAGGGGTTGCTGCTCTTCTATCAAGCAACCTGACAGCTGCTGACACTTCTGATACCCATAAGGTTTCTGCTAACCCAGAACCTGAACCTGTTTCTTTGAATCGAAATGATGATGGAAAGAATGAAGCACCCCAACCCATAGGTGAAAACGCGAAAAATGATGGAGCAAGTGACATAGTAAGTTCAAAAACTGATGGCCAAACAAGTGTACCAATTTCCAATTTTGAAGTTCCAAGACATGATAACAAAAGCGATGCACCAAACTGCAACTTTGAATTTCTGAAACCTTCTGCAGCCGAGACTGCTGTCTGTCTGCCAAATCAAGGTGTAATGGCGGATTGCACGAACCCAAGGACAGAAGAATGCAGCGAACCAGCAAAGCTAATTTGA 1854 0.4347 MRWEKVQMNPLEGNDGGGPGKRWGHTCNAIRGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPAIKGTPPTPRDSHTCTAIGDNLYVFGGTDGMNPLKDLHILDTSSNTWISPTIRGEGPEAREGHSAAVVGKRLFIFGGCGKSADNNTEVYYNDLYILNTETFVWKCAQTSGTPPSPRDSHTCSSWKNKIIVLGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVAFGKNLFVFGGFTDAQNLYNDLYMLDIDTGIWTNVATTTNGPSARFSVAGDCLDPFVGGALVFIGGCNKSLEALDDMYFLYTGIARESEQRPEKLSLRKQLKLKCQEQNTNPVQNQVLVRYGVGADVSPLMTVLNYSQPSRLNLPVNQGFTPGKKMFECKVTESISEGYTIETIIDGKLLRGVLFSNKPKSLHPAANTSTSRKRAGGETDVISNGIHPDKSKISKVNNQDETENRQTVHGESLESHEHRAEGVAALLSSNLTAADTSDTHKVSANPEPEPVSLNRNDDGKNEAPQPIGENAKNDGASDIVSSKTDGQTSVPISNFEVPRHDNKSDAPNCNFEFLKPSAAETAVCLPNQGVMADCTNPRTEECSEPAKLI* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2887 617 SUPERFAMILY Galactose oxidase, central domain 16 240 IPR011043 -
Ahy1g2887 617 Pfam Kelch motif 122 166 - -
Ahy1g2887 617 Pfam Galactose oxidase, central domain 231 278 - -
Ahy1g2887 617 Pfam Galactose oxidase, central domain 180 225 - -
Ahy1g2887 617 Pfam Galactose oxidase, central domain 22 72 - -
Ahy1g2887 617 Pfam Galactose oxidase, central domain 74 114 - -
Ahy1g2887 617 MobiDBLite consensus disorder prediction 502 570 - -
Ahy1g2887 617 MobiDBLite consensus disorder prediction 429 445 - -
Ahy1g2887 617 MobiDBLite consensus disorder prediction 461 487 - -
Ahy1g2887 617 SUPERFAMILY Galactose oxidase, central domain 202 313 IPR011043 -
Ahy1g2887 617 MobiDBLite consensus disorder prediction 543 563 - -
Ahy1g2887 617 PANTHER KELCH REPEAT DOMAIN 1 444 - -
Ahy1g2887 617 MobiDBLite consensus disorder prediction 1 21 - -
Ahy1g2887 617 SMART kelc_smart 35 85 IPR006652 GO:0005515
Ahy1g2887 617 SMART kelc_smart 192 242 IPR006652 GO:0005515
Ahy1g2887 617 SMART kelc_smart 243 289 IPR006652 GO:0005515
Ahy1g2887 617 SMART kelc_smart 86 135 IPR006652 GO:0005515
Ahy1g2887 617 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 444 - -
Ahy1g2887 617 MobiDBLite consensus disorder prediction 427 487 - -
Ahy1g2887 617 Gene3D - 152 375 IPR015915 GO:0005515
Ahy1g2887 617 Gene3D - 66 151 IPR015915 GO:0005515
Ahy1g2887 617 Gene3D - 1 65 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2887 Ahy-Chr1 109718502 109724886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2887 49 308 Acyl Lipid Metabolism Gene Families AT3G05420 29.304 3.79e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2887 - - aip:107634676 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2032 11 129402377 129408391 Ahy1g2887 1 109718502 109724886 hybridization