Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1780 ATGACACATTCATCGCTGCTCCTACTGTTTTTCGTGGCCGCCGTGGCCGCATCCAGCTTCGACGACTCCAACCCCATCCGGCTGGTATCCGACGAGCTCCACGGAATCGAGTCACAGGTCCGGCACGTTATCGGCGAGAGCGCCCATGCAGTGTCGTTCGCCCGCTTCGCCCGGCGCTTCGGGAAGAGCTACCGGACGACGGAGGAGATGAAGCGAAGGTTCCAGATCTTCTCTGATAATCTGAAACTCATCAGATCCACCAACAGGAAGCGACTTTCGTACACTCTCGGTGTTAATCACTTTGCTGATTGGAGTTGGGAGGAGTTCAAAACACAGAGACTTGGCGCTGCTCAAAATTGCTCTGCCACCCTCAAAGGCAGCCACAAGATCACCCAAGCTCCTCTTCCTGAATCAAAAGACTGGAGAGAAGAAGGTATAGTCAGTCCAGTAAAAAATCAAGGCCAGTGCGGATCTTGCTGGACATTCAGCACAACTGGAGCATTGGAGGCTGCCTATGCGCAAGTATATGGAAAGAATATCTCTCTTTCTGAGCAGCAGCTGGTGGATTGTGCTGGTAATTTCAACAACTTTGGCTGCAATGGTGGGTTACCGTCCCAAGCCTTTGAGTATATTAAATACAACGGTGGCCTTGAGACTGAGGAGGCATACCCCTATACTGCAAAAGATGGTGTTTGCAAATTTACAGCTGCAAATGTTGCCGTTCAGGTCACTGAGTCTTTCAACATCACCCTGGGTGCTGAGGATGAATTGAAACACGCAGTTGCTTTTGTTCGGCCAGTTAGTGTGGCATTTGAGGTGGTTGACAGCTTCCAATTGTACGCGGGAGGAGTTTACACCAGTAAAACTTGTGGCAGCAAGCCAATGGATGTGAATCATGCTGTTCTTGCCATTGGGTATGGAGTTGAAGGTGGTGTCCCGTATTGGCTCATAAAAAATTCGTGGGGAGAAGAATGGGGTGACAAAGGCTACTTCAAGATGGAAATGGGCAAGAATATGTGTGGTGTTGCAACTTGTGCGTCGTATCCTTCTGTGGCATAA 1059 0.4976 MTHSSLLLLFFVAAVAASSFDDSNPIRLVSDELHGIESQVRHVIGESAHAVSFARFARRFGKSYRTTEEMKRRFQIFSDNLKLIRSTNRKRLSYTLGVNHFADWSWEEFKTQRLGAAQNCSATLKGSHKITQAPLPESKDWREEGIVSPVKNQGQCGSCWTFSTTGALEAAYAQVYGKNISLSEQQLVDCAGNFNNFGCNGGLPSQAFEYIKYNGGLETEEAYPYTAKDGVCKFTAANVAVQVTESFNITLGAEDELKHAVAFVRPVSVAFEVVDSFQLYAGGVYTSKTCGSKPMDVNHAVLAIGYGVEGGVPYWLIKNSWGEEWGDKGYFKMEMGKNMCGVATCASYPSVA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1780 352 SMART Inhibitor_I29_2 53 109 IPR013201 -
Ahy1g1780 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Ahy1g1780 352 CDD Peptidase_C1A 136 349 IPR039417 -
Ahy1g1780 352 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Ahy1g1780 352 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Ahy1g1780 352 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Ahy1g1780 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Ahy1g1780 352 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Ahy1g1780 352 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Ahy1g1780 352 PANTHER THIOL PROTEASE ALEURAIN 17 349 - -
Ahy1g1780 352 Pfam Papain family cysteine protease 135 349 IPR000668 GO:0006508|GO:0008234
Ahy1g1780 352 Gene3D Cysteine proteinases 44 351 - -
Ahy1g1780 352 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 17 349 - -
Ahy1g1780 352 SUPERFAMILY Cysteine proteinases 48 350 IPR038765 -
Ahy1g1780 352 SMART pept_c1 135 350 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1780 Ahy-Chr1 94137465 94140246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1780 K01366 - nnu:104600548 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3171 11 149240348 149241535 Ahy1g1780 1 94137465 94140246 hybridization
Ahy1g1780 1 94137465 94140246 Ahy13g2343 13 50424466 50428298 PCT
Ahy1g1780 1 94137465 94140246 Ahy3g2055 3 48219433 48224588 PCT
Ahy13g2343 13 50424466 50428298 Ahy1g1780 1 94137465 94140246 PCT
Ahy3g2055 3 48219433 48224588 Ahy1g1780 1 94137465 94140246 PCT