Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2343 ATGGCGTGCTCATCGTCAACGCCGGCGGCGTGGTGGTTCACCATCGCGGTATTGTTCTTTGTCGTCGCCGCCGCATCGGCCGGGTGGAGCTCCGATGATCCGAACCCAATCCGAATGGTGCCGGACGAGCTCCGAGAAGTGGAGGCGGAGGTGGTTAGGGTCGTCGGGCGAACCCGGCACGCTCTCTCTTTCGCTCGGTTCGCCGTCAGGCATGGAAAACGATATGAGAGTCCCGAAGAGCTGAAGATGCGATTTGAAGTGTTCTCTGAGAACAAGAGGCTCATAAGATCTACTAACAGAAAGCGATTGTCGTACACTCTCGCCGTTAACCATTTTGCTGATTGGACTTGGGAGGAGTTCAAAAGACACAGACTAGGCGCAGCACAAAATTGCTCTGCTACCCTTAAGGGCAATCATAAGCTTACTGAAGCTGTTCTTCCTGAGACGCAAGACTGGAGAAAAGAAGGTATTGTTAGCCCAGTCAAAGATCAAGGCTCCTGTGGATCTTGCTGGACATTCAGCACAACTGGAGCTTTGGAAGCAGCCTATGCACAAGCGTTTGGAAAGAGCATCTCTCTTTCTGAGCAGCAGCTAGTGGATTGTGCTGGTGCTTTCAATAACTATGGTTGTAATGGTGGGTTGCCATCCCAAGCTTTTGAATACATCAAATACAGTGGTGGACTTGACTCAGAGGAAGCATATCCCTATACCGCGAAGAATGGTGTCTGCAAATTCAATGCTGAAAATGTTGCTGTTCAAGTCCTTGACTCTGTCAATATTACTTTGGGTTCTGAGGATGAATTAAAGCATGCAGTTGCTTTTGTTCGGCCAGTTAGTGTGGCATTTCAGGTGGTTGATGGTTTCCGATTCTATAAGGATGGTGTTTACACTAGTAACACTTGCGGTAGCACATCCCAGGATGTAAACCATGCTGTTCTCGCTGTTGGGTATGGTGTTGAAAATGGTGTCCCATATTGGCTTATTAAAAATTCATGGGGAAAATCATGGGGTGACGATGGTTACTTCAAGATGGAGCTGGGGAAGAATATGTGCGGTGTTGCTACTTGTGCCTCGTATCCAATTGTGGCTTAG 1092 0.4844 MACSSSTPAAWWFTIAVLFFVVAAASAGWSSDDPNPIRMVPDELREVEAEVVRVVGRTRHALSFARFAVRHGKRYESPEELKMRFEVFSENKRLIRSTNRKRLSYTLAVNHFADWTWEEFKRHRLGAAQNCSATLKGNHKLTEAVLPETQDWRKEGIVSPVKDQGSCGSCWTFSTTGALEAAYAQAFGKSISLSEQQLVDCAGAFNNYGCNGGLPSQAFEYIKYSGGLDSEEAYPYTAKNGVCKFNAENVAVQVLDSVNITLGSEDELKHAVAFVRPVSVAFQVVDGFRFYKDGVYTSNTCGSTSQDVNHAVLAVGYGVENGVPYWLIKNSWGKSWGDDGYFKMELGKNMCGVATCASYPIVA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2343 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 164 175 IPR000169 -
Ahy13g2343 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
Ahy13g2343 363 SUPERFAMILY Cysteine proteinases 59 361 IPR038765 -
Ahy13g2343 363 SMART Inhibitor_I29_2 64 120 IPR013201 -
Ahy13g2343 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 360 - -
Ahy13g2343 363 SMART pept_c1 146 361 IPR000668 GO:0006508|GO:0008234
Ahy13g2343 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 308 318 IPR025660 -
Ahy13g2343 363 Gene3D Cysteine proteinases 55 362 - -
Ahy13g2343 363 PANTHER THIOL PROTEASE ALEURAIN 29 360 - -
Ahy13g2343 363 Pfam Cathepsin propeptide inhibitor domain (I29) 64 120 IPR013201 -
Ahy13g2343 363 PRINTS Papain cysteine protease (C1) family signature 164 179 IPR000668 GO:0006508|GO:0008234
Ahy13g2343 363 PRINTS Papain cysteine protease (C1) family signature 310 320 IPR000668 GO:0006508|GO:0008234
Ahy13g2343 363 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Ahy13g2343 363 Pfam Papain family cysteine protease 146 361 IPR000668 GO:0006508|GO:0008234
Ahy13g2343 363 CDD Peptidase_C1A 147 360 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2343 Ahy-Chr13 50424466 50428298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2343 K01366 - jre:109008520 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2343 13 50424466 50428298 Ahy3g2055 3 48219433 48224588 hybridization
Ahy11g3171 11 149240348 149241535 Ahy13g2343 13 50424466 50428298 PCT
Ahy1g1780 1 94137465 94140246 Ahy13g2343 13 50424466 50428298 PCT
Ahy13g2343 13 50424466 50428298 Ahy11g3171 11 149240348 149241535 PCT
Ahy13g2343 13 50424466 50428298 Ahy1g1780 1 94137465 94140246 PCT