Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1669 ATGGAGACCCTGACGGCCACATCCGACACGGGCACGACCGTGCGTGTCTCCAACATCCCCATATCCGCCACCGCCACCGACCTCGTCCACTTCCTCCAAGCCACACTGGGACCCTCCTCCGTCTTCGCCCTTGAGATCTTCACCGATCAGAACAACGCCACCTGGAACTCCCGCTCCTTCGGCCGCGTTCAGTTCGAGACACCGGACGCCAAAACCAAGGCCCTCTCCCTCTCCCACCACAACACCCTCGTCTTCAAATCCCACTTCCTCCACCTTTCCCACGCCCCCGACGATGTCGTCTTCCGCCCCTCTCTCCCCTCCCACCGCCTCGAAAACGGCACCCTCTATGCCGGCTTCATGGTCCGCGACGACCGCATGAGTGTGCTGCACACCTGGGAACGTGTCAGGGGCTGGCCCATGCCCGAGAGGAGGAAGATCGAGTTCTGGGTCCCACATGATGGACAGTGCTACAAGCTCGAGATTTGGTTCGAGGATATTCTGGAGGCCAATGGGTACTGTTTGGGTGGTGGTGACAAACTCAATGCCCTCCTCTTGAAGCTGAAATATGCACCAAAGATTTATCAGAAAAAATTTGGGTCAAATGTGTCGTCGAAGTTTAATGCTGCTAATGGTAGGTACCATTTCTGCAAGGAGGATTATGATTTTACTTGGGTGCGTACGACAGACTTCTCAGCTATGAAGGCACTTGGACATTCTACATCGTTTTGTTGGGAGATTGAGGAAGGACCATTCAATCAGGATATTTTTTGTAGTTTCCCGCTCTACAGAGAAATTCTGAAAGATCTAACTCTAGAGGAGGGGGAAGAGTATTGTTCTCCGGCAGAAATAGTTCCACTTGTAAACTGTCTTTCTACAGATACTAAGATACCGTATGAGACCCTTTTCCAATTGAATTCCCTCATTCATACCCAGAAAATCAGTCTTGCATCAGTAGATAGTGATTTCATTGACTTGCTAGGAAGTTTAGATGAAGAAACCAAAGCCCTGATTTTTCAGAAATTGCACAAGCTGAATTCCACTTGTTATGAACCTCAAAAATTTGTGAATACTCAATTACATGTGCTAAGTAGTAAGGGTAGAGGTCCTCATCCATCATCGCAGAAAAGGCTGATGGAGAATAACATAATGAGCTGTCATAGAGCCTTGATTACCCCAACAAAGATTTATTGTCTTGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTTCTCAATTTGCTTCAGATTTCATGAGGATCACTTTTGTTGATGAGAACTGGGGTAAGCTTCCAGTTAATGCTGTATCAGCTAGTTTGCAAAAGGGAATCTTTTCAGAACCTTTTAGAACTAAAATATATGAGCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGTTTGAAAAAATTTGAGTTTCTGGCCTTCTCTGCGAGTCAACTCCGATCAAATTCAGTTTGGGTTTTTGCTTCAAGTGACAAGTTGAAAGCAGCAGATATTAGAGAATGGATGGGATGCTTCAACAATATTCGCAGCGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCATCAATGCAAACTTATGAAGTGCCCATTCAAGATGTGGAAATAATTCAAGATATTGAAGTTGAGAGTGATGGTATAAAATACTGTTTCTCAGATGGTATTGGGAAAATTTCCCTCTCTTTTGCAAAAAAGGTTGCTGAAAAGCTAAAGTTGGATAAGAATCAGATTCCATCAGCATTTCAAATTCGGTATGGTGGATACAAAGGTGTTCTTGCTGTTGATCGCCATTCCTTTAGGAAGTTATCGCTGCGTGGCAGTATGCTTAAATTTGAATCGAAAAACAAAATGCTTTGTGTCACTAATTGGAGTGATTCAATGCCTTGCTTTCTCAACCGAGAGGTTATATCTTTGCTGTCTACTTTAGGAGTAAAAGATGAGGCGTTTTTGGCAATGCAGCAGGAACAAGTGCATTTGCTAGGAAGGATGTTGACTGACAGTGATGCGGCTTTGGAAGTTTTGGAAACCCTAAGTGGAGCTGATTCTAAAAGCATTCTAGTGAAGATGTTGCATGGATTTTATAAGCCGAACAGTGAGCCTTACCTGGCGATGATGCTCAGAGCAAATTATGCATACCAGTTATCTGATTTGAGAACTAGATGCCGAATATTTGTTCCCAAGGGTCGTATCTTGTTAGGTTGCTTGGATGAAACTGGTCAATTGGATTATGGTCAAGTATTTGTCCGCATAACTGTGCCCAAAGCTAAGCAACAGTTTGAAGATGAAAGCTTGAGGAAAGTGGATGGTGATGACAGCACTTGTATACTAGTGGGGAAGGTGGTAGTAACAAAAAATCCTTGTCTTCACCCTGGAGACATCAGAGTCCTTGATGCTGTCTACAATGAAGAACTAGAGGAAATGGGTTTGAGGGATTGCCTTGTATTTCCACAAAAAGGTCGTAGGCCTCATCCAAATGAATGCTCTGGGGGTGACCTTGATGGAGATTTATTTTTCTTAAGCTGGGAGAAAGATATGATCCCATCTCACACTGATTCTCCAATGGACTACACGGGGAGGAGGCCTCGTATAATGGACCACGATGTGACACTGGAGGAAATCCATAGGTTTTTTGTTGATTACATGATCAATGATACCTTGGGTGCTATCTCAACCGCTCATCTGGTTCACGCTGACCGTGAACCAGAAAAGGCCAGGAGTCACAAATGCCGGGAGTTGGCAGAACTTCATTCCATGGCTGTTGACTTTGCAAAGACTGGAGCACCTGCTGAAATGCCAAGAGTTCTGAAGCCAAGAGAGTATCCGGATTTCATGGAGAGGTTTGACAAGCCTATGTATATCTCCAACGGGGTACTAGGAAAACTCTACCGTGACATAACTGAGTTGAAATTGCAAGTAACATCAAGCTCTGCCTGGTCAGAGAAGCTTGCTGAGCAATACTATGATCACGAACTTGAAGTTGATGGTTTTGACGCCTACCTTGAAACCGCATCAAGTCACAAAGAAATGTATGCTCAGAAGATGACTAGTTTAATGAAATTCTATTGTGCAGAGACTGAAGATGAGCTGCTGACTGGAAACTTGATAAACCGCGCGTCATATTTGCAGCGTGATAACAGGAGATATGGAGATATGAAGGACCGGATCCTGATCTCGGTCAAGGATCTTCAGCGTGAAGCCAAAGAATGGTTTGAAACAAGCTGTGAACCCCGTGAATATCAACCTATGGCATCTGCATGGTATCATGTGACCTATCACCCAAAATATTACCAGGAAAACTCCAACTTTTTGAGTTTTCCATGGATAGTTGGTGATATTTTACTGCATATAAAGGCTGTATATAGTGGAGTTAACAAATAG 3396 0.4405 METLTATSDTGTTVRVSNIPISATATDLVHFLQATLGPSSVFALEIFTDQNNATWNSRSFGRVQFETPDAKTKALSLSHHNTLVFKSHFLHLSHAPDDVVFRPSLPSHRLENGTLYAGFMVRDDRMSVLHTWERVRGWPMPERRKIEFWVPHDGQCYKLEIWFEDILEANGYCLGGGDKLNALLLKLKYAPKIYQKKFGSNVSSKFNAANGRYHFCKEDYDFTWVRTTDFSAMKALGHSTSFCWEIEEGPFNQDIFCSFPLYREILKDLTLEEGEEYCSPAEIVPLVNCLSTDTKIPYETLFQLNSLIHTQKISLASVDSDFIDLLGSLDEETKALIFQKLHKLNSTCYEPQKFVNTQLHVLSSKGRGPHPSSQKRLMENNIMSCHRALITPTKIYCLGPELETSNHVVKHFSQFASDFMRITFVDENWGKLPVNAVSASLQKGIFSEPFRTKIYERILTILRDGIVIGLKKFEFLAFSASQLRSNSVWVFASSDKLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTYEVPIQDVEIIQDIEVESDGIKYCFSDGIGKISLSFAKKVAEKLKLDKNQIPSAFQIRYGGYKGVLAVDRHSFRKLSLRGSMLKFESKNKMLCVTNWSDSMPCFLNREVISLLSTLGVKDEAFLAMQQEQVHLLGRMLTDSDAALEVLETLSGADSKSILVKMLHGFYKPNSEPYLAMMLRANYAYQLSDLRTRCRIFVPKGRILLGCLDETGQLDYGQVFVRITVPKAKQQFEDESLRKVDGDDSTCILVGKVVVTKNPCLHPGDIRVLDAVYNEELEEMGLRDCLVFPQKGRRPHPNECSGGDLDGDLFFLSWEKDMIPSHTDSPMDYTGRRPRIMDHDVTLEEIHRFFVDYMINDTLGAISTAHLVHADREPEKARSHKCRELAELHSMAVDFAKTGAPAEMPRVLKPREYPDFMERFDKPMYISNGVLGKLYRDITELKLQVTSSSAWSEKLAEQYYDHELEVDGFDAYLETASSHKEMYAQKMTSLMKFYCAETEDELLTGNLINRASYLQRDNRRYGDMKDRILISVKDLQREAKEWFETSCEPREYQPMASAWYHVTYHPKYYQENSNFLSFPWIVGDILLHIKAVYSGVNK* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1669 1131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 97 IPR000504 GO:0003723
Ahy1g1669 1131 PANTHER RNA-DEPENDENT RNA POLYMERASE 9 1125 IPR007855 GO:0003968
Ahy1g1669 1131 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
Ahy1g1669 1131 Gene3D - 4 94 IPR012677 -
Ahy1g1669 1131 Pfam RNA dependent RNA polymerase 390 971 IPR007855 GO:0003968
Ahy1g1669 1131 CDD RRM_SF 14 83 - -
Ahy1g1669 1131 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 9 1125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1669 Ahy-Chr1 87215442 87219903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1669 K11699 - gmx:100808274 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1751 11 112096036 112100479 Ahy1g1669 1 87215442 87219903 hybridization