Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3597 ATGGAGAACATGCAGTCCGCGGAGGAGCTGGTTCGGGAGTTCCTCGTCTTCCGAGGCTTCACCAACACTCTCCAATCCTACGACTCTGAGCTCCGAACCGATCTTGGAAAGGGCTTCCACGTCGATAAGATCCTCGACCTCATCTTCTCCCTCTACGTTCCCAAATTCCAAGCCGATAGGCTCGTTGCCCTCCTCTCCTTCTTTAAGCACTACCTCTCCTCTTCTTCCGAAACCGCACTCCTTTCTACGCTCTCCAAAATCCAAACTTCTCTTCTCCGCTTCTACGTGGTTCACGCCTTGCAAGCCAATCGCAGGGACAGAGTCATCGACTTCTTCGCTGTCCATGGCAGTGACCTCTTGCAACGCTCACAGGATTGGACTCGCTGGTTCGCGATTCCTTATGTTAAGAATCCGAACCTGGATCCTGAATTTCGGGTTTGTTTCTCCAAGGAGTGGTATGAGGCCTTGCATCTTTCTGTCAGAAACTTCTTTAGCGAGATATTCAATGGAACTCGGCTACCTGCACTGCTGAAGATCAGTTCAGAGATGAATGCCACCAACGTACTCAAAAAAGATATCCTGAATCTGAATATTAAATTGGCAGAGCTTCAGGCTTTGCTTGATGAGAAAGAGGCGAAATTATCACACTATAGGAGTATGGAAGGAAGCATTAGTTCATTGAGCAATTTGCGGGAGGAAAGTTCTCAGATGTCAAGAGGTTTTCCAGAGGTTTCCCCAACTGCTGTTCCACGAGCAGTTCAAACAGAAATTAACCAAGATTCAGTTGTGAATGGAGCTGCAAATATTCAGTCTGAGTATGTCATTTCCAAGTCAGGTGATAATTCAACTGTGGCATTGAATGACCGTGTTGGAAATGGTGGATCAGGCGATACCATGCAAACAGTTCATGAAAGTCCAAGTATAGAAATTAGTGGAGAAGTTTGTGGTGAAGAAGATTTTCCTGATGTCAAAGTAGAGCACCAGGAGACGTTCTTGGGGCACACTAGTCCAATCAGCCGATGTTGCTTCTCTGCTTCCGGGAACAATATCGCTAGTGCTTCTCTAGATGGAACTGTTAGAATATGGACATATGATTCATCAACTCCGGTGTCTAGAAATGCAACCATATATTGTGGCACGGAAATTTTGTCTCTTGACTGGGAATGTAAATCTGACCGCTTGCTGTTAATAGGTACATCAGATGGGTGTATTAAGGCATGGAATGTAGATGCAAAGAGAGTTGTTTGTGATCTCAATACAACTCAAGCATTTCCAAGTGTCTTGGACATAAAGTGCAGTCCTGTGGAACCTATTTTTGTATCTGCAGCAGGATCTGGAGGTGCTGGTTCCAATTATTTTGACAACCTGGGTTTTGCTTCTCTCACTGTGTGGAACATGAAGACGTGGAAACCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCTATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTAGCTGCTTCTGCTGTTGATGGAATGATCCACATGTTTGACATGTCTGCTGGCCTACAAATTACTGGCTGGCCTGCACATGATTCTTCTATCAGTTCTATTCTTTTTGGACCGGATGAGACTAGCATTTTTAGCCTGGGCTCTGACAGGAAGATTTTTGAGTGGAGTTTGCAAAATCAAGGTCAAATTCTATGGTCAAGAGACTGCAGTAGGTTCTCTTACCCTCTGAAAGGTTCACAATATTGCAGACATGAGATGGCATTAGATGCAAGTGGGAGAAGACTCTTGGTAACGTCTAGTTCAGTTAGAGCCCCCATATACCAGGTTCAAGGTCATTTAAATGGTTGGAGAACACTTCCTCATGGTGCTCCTATTACTGCTGTGGATTGGCATCCTACCTCGCCCATTTTCCTGACTGGATCAGCTGATAACTCTGTCCGAGTGACATCTTTATCATAG 1944 0.4491 MENMQSAEELVREFLVFRGFTNTLQSYDSELRTDLGKGFHVDKILDLIFSLYVPKFQADRLVALLSFFKHYLSSSSETALLSTLSKIQTSLLRFYVVHALQANRRDRVIDFFAVHGSDLLQRSQDWTRWFAIPYVKNPNLDPEFRVCFSKEWYEALHLSVRNFFSEIFNGTRLPALLKISSEMNATNVLKKDILNLNIKLAELQALLDEKEAKLSHYRSMEGSISSLSNLREESSQMSRGFPEVSPTAVPRAVQTEINQDSVVNGAANIQSEYVISKSGDNSTVALNDRVGNGGSGDTMQTVHESPSIEISGEVCGEEDFPDVKVEHQETFLGHTSPISRCCFSASGNNIASASLDGTVRIWTYDSSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTQAFPSVLDIKCSPVEPIFVSAAGSGGAGSNYFDNLGFASLTVWNMKTWKPMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDRKIFEWSLQNQGQILWSRDCSRFSYPLKGSQYCRHEMALDASGRRLLVTSSSVRAPIYQVQGHLNGWRTLPHGAPITAVDWHPTSPIFLTGSADNSVRVTSLS* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3597 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 647 IPR001680 GO:0005515
Ahy19g3597 647 Gene3D - 454 574 IPR015943 GO:0005515
Ahy19g3597 647 SMART WD40_4 512 551 IPR001680 GO:0005515
Ahy19g3597 647 SMART WD40_4 369 408 IPR001680 GO:0005515
Ahy19g3597 647 SMART WD40_4 468 509 IPR001680 GO:0005515
Ahy19g3597 647 SMART WD40_4 607 645 IPR001680 GO:0005515
Ahy19g3597 647 SMART WD40_4 324 363 IPR001680 GO:0005515
Ahy19g3597 647 Coils Coil 193 220 - -
Ahy19g3597 647 SUPERFAMILY WD40 repeat-like 318 643 IPR036322 GO:0005515
Ahy19g3597 647 PANTHER OS05G0299300 PROTEIN 1 646 - -
Ahy19g3597 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 372 IPR001680 GO:0005515
Ahy19g3597 647 Gene3D - 575 647 IPR015943 GO:0005515
Ahy19g3597 647 Pfam WD domain, G-beta repeat 606 643 IPR001680 GO:0005515
Ahy19g3597 647 Pfam WD domain, G-beta repeat 328 362 IPR001680 GO:0005515
Ahy19g3597 647 Gene3D - 202 450 IPR015943 GO:0005515
Ahy19g3597 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 554 IPR001680 GO:0005515
Ahy19g3597 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 613 647 - -
Ahy19g3597 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 366 - -
Ahy19g3597 647 Pfam Anaphase-promoting complex subunit 4 WD40 domain 481 531 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3597 Ahy-Chr19 158560207 158564989 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3597 K24760 - gmx:100788591 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3597 19 158560207 158564989 Ahy19g3597 19 158560207 158564989 ECH
Ahy19g3597 19 158560207 158564989 Ahy9g2018 9 108523978 108530893 hybridization