Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3573 ATGTGGCCGTTCAACAGAAAAGGTCCTTCTGGATTCTCATCTTCTTCTACCGCCGAAGAGGTCACCGCAGGCATCGATGCTACTGGCCTGACTGCCATCGTCACAGGAGCCAGCAGTGGAATTGGCTCTGAGACTGCGCGTGTTCTTGCTTTGCGCGGTGCTCATGTCGTTATGGGGGTCAGAAACTTGACGGCTGCTAAACAAGTTCAACAATCAATACTCAAGGACAATCCCTCAGCCAAACTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCACAATATAAATCCTCTGGTCGTCCTCTCAACATATTAATAAACAATGCTGGAATTATGGCATGCCCCTTCACGCTCTCCAAAGACAACATTGAACTACAGTTTGCCACAAATCACATCGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACAATGAAGAAAACATCACGCCAGAGTAAGAGAGAAGGAAGAATTGTTAATGTGTCCTCCGAGGCTCACCGTTTTACTTATTCTGAAGGAATTCGTTTTGACAAAATCAACGACGAATCAAGTTACCACAGCTGGCGTGCTTATGGGCAGTCCAAGCTAGCAAACATCTTACATGCTAATCAACTCACAACACGTCTTAAGGAAGACGGGGCTGATATTACTGCGAATTCTCTTCATCCGGGAACCATTGCCACCAACCTTTTCCGTCATATGGGTGTGGCCAATGGTATAGTTAATGCAATTGGGAGACTTGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGCAAATACTTCTCTGATAGCAATCTGTCCAAAACAACCTCCCATGGAACTGATGCTGATTTGGCTAAGAAACTCTGGGATTTCAGTATGAATTTGATCAAGTAG 942 0.4437 MWPFNRKGPSGFSSSSTAEEVTAGIDATGLTAIVTGASSGIGSETARVLALRGAHVVMGVRNLTAAKQVQQSILKDNPSAKLDAMELDLSSMESVKKFASQYKSSGRPLNILINNAGIMACPFTLSKDNIELQFATNHIGHFLLTNLLLDTMKKTSRQSKREGRIVNVSSEAHRFTYSEGIRFDKINDESSYHSWRAYGQSKLANILHANQLTTRLKEDGADITANSLHPGTIATNLFRHMGVANGIVNAIGRLVLKNVQQGAATTCYVALHPQVKGVSGKYFSDSNLSKTTSHGTDADLAKKLWDFSMNLIK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3573 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Ahy19g3573 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Ahy19g3573 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Ahy19g3573 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Ahy19g3573 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Ahy19g3573 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Ahy19g3573 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Ahy19g3573 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Ahy19g3573 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Ahy19g3573 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Ahy19g3573 313 Gene3D - 22 313 - -
Ahy19g3573 313 Pfam short chain dehydrogenase 31 177 IPR002347 -
Ahy19g3573 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3573 Ahy-Chr19 158384044 158385873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3573 31 183 Acyl Lipid Metabolism Gene Families AT1G62610 30.625 7.48e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3573 - - gmx:100784001 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3573 19 158384044 158385873 Ahy19g3573 19 158384044 158385873 ECH
Ahy19g3573 19 158384044 158385873 Ahy9g2053 9 109096848 109098642 hybridization
Ahy15g3556 15 158336693 158342214 Ahy19g3573 19 158384044 158385873 PCT
Ahy5g3147 5 113287128 113291671 Ahy19g3573 19 158384044 158385873 PCT