Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3556 ATGTGTTCTTCTGGATTCTCAGCTTCTTCAACTGCTGAAGAAGTTACTCATGGAATCGATGGGGTTGGCCTCACTGCTATTGTCACAGGAACAACAAGAGGCATTGGCGTAGAGACTGCAAGAGTTCTTGCTCTGCGTGGTGTGCACGTGATAATGGCGGTGAGAAACACGAACGCTGCAAAAGATGTGAAAGAAGCAATTCTTAAGGAGATTCCAACAGCTAAGGTTGATGCCATGGAATTAGACCTTAGTTCAATGGAATCTGTCCGCAAATTTGTGTCAGATTTCAATTCCTCTGGTCTCCCACTCAACATCCTAATAAACAATGCAGCAATTCTGGCAACTCCTTTTACTCTGTCCAAAGACAACATTGAACTACAATTTGCCACAAACCATATAGGTCATTTTCTTTTGACAGATCTTTTGTTAGATACCATGAAGAAAACAGCTTATGAAAGTAAGAAAGAAGGAAGAATAATTAATATCTCCTCGGACGGTCACCGATACACATATCCCGAAGGAATTCAATTTGATACAAATAATGATAAATCAAGTTACAACATGTGGTATGCATATGGCCAATCAAAGCTTGCCAACATATTACATGCCAATGAGCTTGCAACACGTCTTAAGGAAGAAGGGGTAGATATAACTGCTAATTCTCTTCATCCGGGAGCTATTGTCACCAATATTTTAGATCCTCATCTTGTTGACTCTATACCACCCGAGCTAATTAATTCTCTTGGGAAATATGAGATTAAAACCCTCCAGCAAGGAGCAGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAGGGGAATTAGTGGCCAATATTTCTCAGATTGTAATGTGTCCAAGCCAAGCACCCATGGAACTGACACTCTTATGGCCAAGAAACTCTGGGATTTATCCATGAAATTAACTCATCAATGA 936 0.4049 MCSSGFSASSTAEEVTHGIDGVGLTAIVTGTTRGIGVETARVLALRGVHVIMAVRNTNAAKDVKEAILKEIPTAKVDAMELDLSSMESVRKFVSDFNSSGLPLNILINNAAILATPFTLSKDNIELQFATNHIGHFLLTDLLLDTMKKTAYESKKEGRIINISSDGHRYTYPEGIQFDTNNDKSSYNMWYAYGQSKLANILHANELATRLKEEGVDITANSLHPGAIVTNILDPHLVDSIPPELINSLGKYEIKTLQQGAATTCYVALHPQVRGISGQYFSDCNVSKPSTHGTDTLMAKKLWDLSMKLTHQ* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3556 311 CDD retinol-DH_like_SDR_c_like 23 302 - -
Ahy15g3556 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 288 IPR036291 -
Ahy15g3556 311 Gene3D - 20 311 - -
Ahy15g3556 311 PANTHER RETINOL DEHYDROGENASE 2 308 - -
Ahy15g3556 311 Pfam short chain dehydrogenase 25 232 IPR002347 -
Ahy15g3556 311 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Ahy15g3556 311 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Ahy15g3556 311 PRINTS Glucose/ribitol dehydrogenase family signature 192 211 IPR002347 -
Ahy15g3556 311 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Ahy15g3556 311 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Ahy15g3556 311 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3556 Ahy-Chr15 158336693 158342214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3556 27 164 Acyl Lipid Metabolism Gene Families AT1G62610 29.932 7.41e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3556 - K19329 cam:101490020 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3556 15 158336693 158342214 Ahy15g3556 15 158336693 158342214 ECH
Ahy15g3556 15 158336693 158342214 Ahy5g3147 5 113287128 113291671 hybridization
Ahy15g3556 15 158336693 158342214 Ahy19g3573 19 158384044 158385873 PCT
Ahy15g3556 15 158336693 158342214 Ahy9g2053 9 109096848 109098642 PCT