Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3243 ATGATAATGGAAGAGAATCTTCTAGCGGCAAAAGAAAGATCATCATCATGGACATGGAAGAAAGGTTACAAAGAAGAAATGAAGAGGATATGTGAGATAGCAGGGCCCATGGTGGTAGTGATAGCTTCTCAGTATCTGTTGCAGGTGGTTTCAACCATGATGGTTGGTCACCTTGGCGAGCTTGCTCTCTCAAGCTCTTCTTTGGCCATATCCCTCTCTGGTGTCACCGGTTTCAGCCTCCTTATGGGGATGGCGAGTGGACTGGAAACTATATGTGGACAGGCTTATGGAGCAGAACAATACCAAAGAATTGGAATGCAAACATACACTGCCATCTTTTCTCTCATATTGGTCTGTGTTCCCCTCTCTATTCTTTGGATCAACATTGAACAGATACTAGTCTTCCTAGGCCAGGACCCTCTCATTGCTCATGAAGTAGCCAAGTTCATCATATGGCTTATTCCAGCCCTTTTTGCATATGCAATTCTGCAGCCGTTAGTTCGATATTTCCAAATCCAAAGCTTGCTTCTTCCCATGCTTGTAAGTTCTTGTGTCACTCTATTCCTCCATATACCTCTTTGTTGGCTCTTGGTGTTCAAGGCTGGACTCAATAGTGCTGGTGGAGCAATAGCAGTTAGCATTTCAATTTGGTGCAATGTCATTTTTCTTGGATTATTCATGAGATACTCTCCATCGTGTGCAAAAACACGCGCTCCGATTTCTCTGGAGATGTTCCGAGGAGTTGGGGAGTTTTTTCGCTTTGCTGTCCCTTCTGCAGTAATGATTTGCCTTGAATGGTGGTCATATGAGTTGCTTATCTTGCTGTCTGGGCTGTTACCAAACCCACAACTTGAGACTTCAGTTTTATCTGTTTGTCTTAATACAATTTCAACTCTCTATACCATCCCTTTTGGAATTGGTGCTGCAGCAAGCACAAGAGTTTCAAATGAATTAGGAGCAGGGAAACCACTAGCTGCTCGTGTAGCCGTGCTGGCTGGAATGTCTCTTGCAGTAATTGAGACGAGTATAGTAAGCGCAACCCTCTTTTCGTGTCGCCACATTTATGGTTATGTTTTCAGCAACGAGGAGGAAGTTGTTGATTATGTCACTGTCATGGCTCCTCTGGTTTGTGTATCTGTTATACTAGATAGCCTACAAGGTGTTCTGGCAGGGATTGCTAGAGGTTGTGGATGGCAGCACTTAGGAGTTTTTGTAAACCTAGGAGCTTTCTACCTCTGTGGGATTCCGGCTGCGGCTGCGTTGGCATTTTGGGTGAATCTGAAAGGAAAAGGACTTTGGATTGGTATACAAGTTGGTGCATTTGTTCAAACTGTTCTACTTGCTACCATAACAAGCTGCATAAATTGGGAACAACAGGCAATCAAGGCAAGGAAGAGAATATTTGATGGTCAATTTTCAGCAGATAATATACTGATATGA 1440 0.4354 MIMEENLLAAKERSSSWTWKKGYKEEMKRICEIAGPMVVVIASQYLLQVVSTMMVGHLGELALSSSSLAISLSGVTGFSLLMGMASGLETICGQAYGAEQYQRIGMQTYTAIFSLILVCVPLSILWINIEQILVFLGQDPLIAHEVAKFIIWLIPALFAYAILQPLVRYFQIQSLLLPMLVSSCVTLFLHIPLCWLLVFKAGLNSAGGAIAVSISIWCNVIFLGLFMRYSPSCAKTRAPISLEMFRGVGEFFRFAVPSAVMICLEWWSYELLILLSGLLPNPQLETSVLSVCLNTISTLYTIPFGIGAAASTRVSNELGAGKPLAARVAVLAGMSLAVIETSIVSATLFSCRHIYGYVFSNEEEVVDYVTVMAPLVCVSVILDSLQGVLAGIARGCGWQHLGVFVNLGAFYLCGIPAAAALAFWVNLKGKGLWIGIQVGAFVQTVLLATITSCINWEQQAIKARKRIFDGQFSADNILI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3243 479 Pfam MatE 257 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy19g3243 479 Pfam MatE 36 196 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy19g3243 479 CDD MATE_eukaryotic 26 462 IPR045069 GO:0042910|GO:1990961
Ahy19g3243 479 TIGRFAM matE: MATE efflux family protein 36 433 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ahy19g3243 479 PANTHER PROTEIN DETOXIFICATION 11 466 - -
Ahy19g3243 479 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3243 Ahy-Chr19 155585246 155588554 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3243 K03327 - gmx:100788647 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3243 19 155585246 155588554 Ahy19g3243 19 155585246 155588554 ECH
Ahy19g3243 19 155585246 155588554 Ahy9g2398 9 112813792 112816728 hybridization