Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3236 ATGCCCTTCATTATTCTCTCTTCTTCACACCCTTCTTTGTTGACCGCCAAAGCCCTAAAACCTTCGATTCACGCCATGAAGGACCGCCCTACGCTGTCCTCTTATGGCGCCATTTACGTTCCCCCGCACCACCGCCTCCGCTCCGTCATCACTTCCGCCAATTACAACTCCTCCGCTCCCTCTGTAGCCAAGCTCCGGGATCACCATGGCGCAGCTCTAAACCCTAGACCCGTTGCTTCAGCTGCTCCTACCACTGTGCATCGCTCGCAAACGACGTTGCCGGAGCAAATTCCTGTCAAGGGGAATTCGCGCTTTGTTTCAGCTTACGACGACGTGGTTTCCGAGGAAGGCTCCGATCGTGAATTCGAGGCTCCCTCATTTCGGAGTGCTTCACCAAATGATAACGTTGATGAGTGGATGAGGAAGCTAACATTGCTCTTAAACGACAAGAGTAAGCAAGAGTTGTTGTCCAGGGAGAAAAAGGATAGGCGTGATTTTGATCAAATTGCGCTTTTGGCAAGCAGAATGGGGCTGTATAGCCACATGTATGCAAAGGTTGTTGTCTTCAGTAAGGTTCCACTTCCAAACTATAGATATGACTTGGACGATAGGCGGCCGCAGAGGGAGGTGAGCATGCCTATAACCTTGTTAAGGCGAGTTGATGCATACTTTGAGGAACACCTTACCCGAAAGTCCAAGATGAAGGAAAGCTTTTCAGATGTATCATTTACAAGATCAAGCAGTAACAGTAGTATTGGTACAGATGAAGGGCTTTTTGAGCACCCTGAGCCACTTGCATCTAGTAAGGCTGTTGGGGAGAAAATACTTAGGCGGAGGAGCTTGCAAATGCATGATCAGCAGCAAGCATGGCAGGAATCTCCAGAAGGAAGAAGAATGCTAGAATTTCGCAGGAGTCTCCCTGCTTATAAAGAGAAAAAAGCAATATTGTCTCTCTTATCAAGAAATCAGGTAGTTGTCATCTCAGGCGAAACAGGTTGTGGCAAGACAACTCAAATTCCACAGTTTATTTTAGAATCTGAGATAGAATCAGTTCGAGGAGCTGCTTGTAATATCATATGCACACAACCAAGACGCATATCAGCTATGTCTGTTTCTGAAAGGGTTGCCTACGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGATTGGAGGGTATGAAGGGGAGAGATACCCATCTTCTCTTTTGCACCACGGGCATCTTATTAAGAAGATTGCTAGCTGATAGAAACTTAACAGGTGTAACTCATGTTATCGTGGATGAAATTCATGAGCGTGGGATGAATGAAGATTTTCTGCTTATCGTCCTTAAAGATCTCCTTCCTCACCGACCTGAAATGAAACTGATTTTGATGAGTGCTACCCTAGATTCAGAGCTCTTCTCTTCTTACTTTAATGGGGCACCAGTTATGAATATTCCGGGCTTCACATATCCCGTTAGAACTCATTTTTTGGAGGACATTCTTGAAATGACGGGCTACAGATTGACAACTTCTAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGTCCCAAGAAAGAGGAAAAGCCAAATTGCTTATGTTGTCGAGAGGTTAATATTTGAAGAACCCAAAGATGGAGTAAGAAAAATAGTGCTTGCAACAAATATCGCTGAAACGAGTATCACAATAAATGACGTTGTTTTTGTGCTTGACTGCGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAACACGCCCTGTTTGCTTCCAACATGGATCTCTAAGGTTTCTGCCCAACAGAGACGAGGAAGAGCTGGTCGTGTTCAACCTGGAGTGTGTTACCATATCTATCCTAGATGTGTATATGATGCATTTGCTGAGTATCAATTGCCAGAAATTTTGAGGACACCCTTGCAATCTCTGTGTCTGCAAATAAAAAGTCTAAGACTTGGAAGCATACCTGAGTTCTTGTCTAGGGCTTTGCAGTCTCCGGAGATCCTTGCGGTACAAAATGCTATTGAGTATTTGAAAATAATTGGGGCTTTGGATGAGAATGAGAATTTGACTACTCTAGGGTCCTATCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTTATATTAGGGGCTATCTTCAATTGCCTGGATCCAATATTAACTGTGGCTGCTGGCCTTAGTGTGAGAGATCCTTTCCTAACACCACTGGACAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAGTTTGCTGGAGCATATAGTGACCACCTTGCACTTATAAAGGCTTACGAGGGTTGGAAAGATGCAGAATTAGACATTGGAGGATGTGAATATTGCTGGAAAAATTTTCTTTCAGCACAATCAATGAAAGCTATTGATGCTCTTAGGAGAGAGTTCAGATGCCTGCTCAAGGATATTGGATTAGTTGATAGCAATACAGCCAACTGCAACTTGTGGAGCTGTGATGTGAATCTCATCCGGGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGCGCTGTTGTGCACAATGAAAAGTCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCCGTCAATGCTCGGGAAACTAGAATTCCATATCCATGGTTACTTTTTAATGAGAAGATAAAAGTGAACTCTGTTTTCCTCCGCGACTCCACAGCTGTGCCTGATGCAGTGGTGCTTCTGTTTGGTGGGAACTTATTGAAAGGGGATGCTGATGGCCACTTAAAAATGTTGGGAGGATATCTGGAGTTCTTCATGGAACCTCCTGTTGCTGATCTGTACCAGTGTGTAAAGAGAGAACTTGATGACTTAATTCAAAGAAAACTACTTTTTCCAAAGATGAGCATACACTTGTATGATGAACTCCTATCAGCAGTGCGGTTGCTGATTTCCATAGACACATGTGAAGGCAAATTTGTATTTGGTCGTCGGGTCTTTAAACCAGCAAAGTCAACAGTGATGGCCACATCACATCCAGCATCGATTTCAAGGACTGAGAGTGGCCCTGGGGGTGATAATTCTAAAAGTCAGCTCCAGACCTTACTCACAAGAGCAGGATATGCTGCACCCAGCTACAAGACTAAACAATTGAAGAATAATCAGTTTCGGGCTACAGTTGAGTTCAATGGAATGCAGATAATGGGCCAACCCTGTAGCAATAAGAAAAGTGCAGAAAAAGATGCTGCAGCTGAGGCCTTGCAGTGGCTGATGGGTGGAAAACAGTCGGGCAGTGAGTATATCAGTCACATGTCCAAGTTGCTGAAGAAAAGTAAGAAGGATCACAACTGA 3330 0.4369 MPFIILSSSHPSLLTAKALKPSIHAMKDRPTLSSYGAIYVPPHHRLRSVITSANYNSSAPSVAKLRDHHGAALNPRPVASAAPTTVHRSQTTLPEQIPVKGNSRFVSAYDDVVSEEGSDREFEAPSFRSASPNDNVDEWMRKLTLLLNDKSKQELLSREKKDRRDFDQIALLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVSMPITLLRRVDAYFEEHLTRKSKMKESFSDVSFTRSSSNSSIGTDEGLFEHPEPLASSKAVGEKILRRRSLQMHDQQQAWQESPEGRRMLEFRRSLPAYKEKKAILSLLSRNQVVVISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVAYERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLTGVTHVIVDEIHERGMNEDFLLIVLKDLLPHRPEMKLILMSATLDSELFSSYFNGAPVMNIPGFTYPVRTHFLEDILEMTGYRLTTSNQIDDYGQERMWKMNKQVPRKRKSQIAYVVERLIFEEPKDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGVCYHIYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSIPEFLSRALQSPEILAVQNAIEYLKIIGALDENENLTTLGSYLTMLPMEPKLGKMLILGAIFNCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFAGAYSDHLALIKAYEGWKDAELDIGGCEYCWKNFLSAQSMKAIDALRREFRCLLKDIGLVDSNTANCNLWSCDVNLIRAVICYGLYPGICAVVHNEKSFSLKTMEDGQVLLYSNSVNARETRIPYPWLLFNEKIKVNSVFLRDSTAVPDAVVLLFGGNLLKGDADGHLKMLGGYLEFFMEPPVADLYQCVKRELDDLIQRKLLFPKMSIHLYDELLSAVRLLISIDTCEGKFVFGRRVFKPAKSTVMATSHPASISRTESGPGGDNSKSQLQTLLTRAGYAAPSYKTKQLKNNQFRATVEFNGMQIMGQPCSNKKSAEKDAAAEALQWLMGGKQSGSEYISHMSKLLKKSKKDHN* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3236 1109 CDD DEXHc_RHA-like 322 482 - -
Ahy19g3236 1109 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 831 912 IPR011709 -
Ahy19g3236 1109 CDD SF2_C_RHA 487 621 - -
Ahy19g3236 1109 MobiDBLite consensus disorder prediction 239 255 - -
Ahy19g3236 1109 Gene3D - 508 632 IPR027417 -
Ahy19g3236 1109 SMART ha2_5 675 765 IPR007502 GO:0004386
Ahy19g3236 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 779 IPR027417 -
Ahy19g3236 1109 MobiDBLite consensus disorder prediction 1004 1023 - -
Ahy19g3236 1109 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 537 1031 - -
Ahy19g3236 1109 Gene3D - 265 484 IPR027417 -
Ahy19g3236 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 483 IPR014001 -
Ahy19g3236 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 653 IPR001650 -
Ahy19g3236 1109 MobiDBLite consensus disorder prediction 239 261 - -
Ahy19g3236 1109 SMART DRBM_3 1021 1084 IPR014720 -
Ahy19g3236 1109 PANTHER ATP-DEPENDENT RNA HELICASE 97 513 - -
Ahy19g3236 1109 PANTHER ATP-DEPENDENT RNA HELICASE 537 1031 - -
Ahy19g3236 1109 Pfam Helicase associated domain (HA2) 676 749 IPR007502 GO:0004386
Ahy19g3236 1109 Pfam DEAD/DEAH box helicase 315 467 IPR011545 GO:0003676|GO:0005524
Ahy19g3236 1109 Gene3D - 996 1088 - -
Ahy19g3236 1109 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 97 513 - -
Ahy19g3236 1109 Pfam Double-stranded RNA binding motif 1021 1083 IPR014720 -
Ahy19g3236 1109 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1020 1085 IPR014720 -
Ahy19g3236 1109 SUPERFAMILY dsRNA-binding domain-like 1016 1093 - -
Ahy19g3236 1109 SMART helicmild6 524 613 IPR001650 -
Ahy19g3236 1109 SMART ultradead3 304 497 IPR014001 -
Ahy19g3236 1109 Gene3D - 655 761 - -
Ahy19g3236 1109 Pfam Helicase conserved C-terminal domain 540 612 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3236 Ahy-Chr19 155521340 155530747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3236 K14442 - gmx:100798684 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3236 19 155521340 155530747 Ahy19g3236 19 155521340 155530747 ECH
Ahy19g3236 19 155521340 155530747 Ahy9g2405 9 112869691 112879077 hybridization